Variant position: 41 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: 299 The length of the canonical sequence.
Location on the sequence:
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human PSVDLMHQAVPYPSAPRKQR RERTTFTRSQLEELEALFAKT
Mouse PNVDLMHQAVPYSSAPRKQR RERTTFTRSQLEELEALFAKT
Bovine PSVDLMHPAVSYPSAPRKQR RERTTFTRSQLEELEALFAKT
Sequence annotation in neighborhood: The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
Type: the type of sequence feature. Positions: endpoints of the sequence feature. Description: contains additional information about the feature.
Type Positions Description
1 – 299 Cone-rod homeobox protein
39 – 98 Homeobox
The leucine zipper of NRL interacts with the CRX homeodomain. A possible mechanism of transcriptional synergy in rhodopsin regulation.
Mitton K.P.; Swain P.K.; Chen S.; Xu S.; Zack D.J.; Swaroop A.;
J. Biol. Chem. 275:29794-29799(2000)
Cited for: INTERACTION WITH NRL; CHARACTERIZATION OF VARIANT CORD2 TRP-41; CHARACTERIZATION OF VARIANT LCA7 TRP-90;
Mutations in the cone-rod homeobox gene are associated with the cone-rod dystrophy photoreceptor degeneration.
Swain P.K.; Chen S.; Wang Q.-L.; Affatigato L.M.; Coats C.L.; Brady K.D.; Fishman G.A.; Jacobson S.G.; Swaroop A.; Stone E.; Sieving P.A.; Zack D.J.;
Cited for: VARIANTS CORD2 TRP-41 AND MET-242; VARIANT RP GLN-41; VARIANT THR-158;
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