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UniProtKB/Swiss-Prot P05106: Variant p.Gly598Ser

Integrin beta-3
Gene: ITGB3
Variant information

Variant position:  598
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  Disease [Disclaimer]
The variants are classified into three categories: Disease, Polymorphism and Unclassified.
  • Disease: Variants implicated in disease according to literature reports.
  • Polymorphism: Variants not reported to be implicated in disease.
  • Unclassified: Variants with uncertain implication in disease according to literature reports. Evidence against or in favor of a pathogenic role is limited and/or conflicting.

Residue change:  From Glycine (G) to Serine (S) at position 598 (G598S, p.Gly598Ser).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from glycine (G) to small size and polar (S)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  0
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description:  In GT.
Any additional useful information about the variant.



Sequence information

Variant position:  598
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  788
The length of the canonical sequence.

Location on the sequence:   DWTGYYCNCTTRTDTCMSSN  G LLCSGRGKCECGSCVCIQPG
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         DWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPG

Mouse                         DWTGYYCNCTTRTDTCMSTNGLLCSGRGNCECGSCVCVQPG

Rat                           DWTGYYCNCTTRTDTCMSTNGLLCSGRGNCECGSCVCVQPG

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 27 – 788 Integrin beta-3
Topological domain 27 – 718 Extracellular
Repeat 593 – 629 IV
Region 463 – 629 Cysteine-rich tandem repeats
Glycosylation 585 – 585 N-linked (GlcNAc...) asparagine
Disulfide bond 432 – 681
Disulfide bond 570 – 601
Beta strand 598 – 600


Literature citations

Three novel integrin beta3 subunit missense mutations (H280P, C560F, and G579S) in thrombasthenia, including one (H280P) prevalent in Japanese patients.
Ambo H.; Kamata T.; Handa M.; Taki M.; Kuwajima M.; Kawai Y.; Oda A.; Murata M.; Takada Y.; Watanabe K.; Ikeda Y.;
Biochem. Biophys. Res. Commun. 251:763-768(1998)
Cited for: VARIANTS GT PRO-306; PHE-586; SER-598 AND SER-605;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.