UniProtKB/SwissProt variant VAR

Variant information

Variant position:

252

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:

LP/P [Disclaimer]

The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Proline (P) to Arginine (R) at position 252 (P252R, p.Pro252Arg).

Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:

Change from medium size and hydrophobic (P) to large size and basic (R)

The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:

-2

The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Variant description:

In PS and JWS.

Any additional useful information about the variant.

Other resources:

Links to websites of interest for the variant.

Variant rs121909627 [ dbSNP | Ensembl ]

Sequence information

Variant position:

252

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:

822

The length of the canonical sequence.

Location on the sequence:

VENEYGSINHTYQLDVVERS P HRPILQAGLPANKTVALGSN

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         VENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSN

Mouse                         VENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSN

Rat                           VENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSN

Chicken                       VENKYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSN

Xenopus laevis                VENKYGAINHTYQLDVVERSPHRPILQAGLPANTSVTVGTT

Drosophila                    VCNSLGCIRHDTQVIVSDRVNHKPILMTG-PLNLTLVVNST

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	22 – 822	Fibroblast growth factor receptor 1
Topological domain	22 – 376	Extracellular
Glycosylation	240 – 240	N-linked (GlcNAc...) asparagine
Glycosylation	264 – 264	N-linked (GlcNAc...) asparagine
Alternative sequence	62 – 822	Missing. In isoform 3.
Alternative sequence	151 – 822	Missing. In isoform 16.

Literature citations

Clinical findings in a patient with FGFR1 P252R mutation and comparison with the literature.
Roscioli T.; Flanagan S.; Kumar P.; Masel J.; Gattas M.; Hyland V.J.; Glass I.A.;
Am. J. Med. Genet. 93:22-28(2000)
Cited for: INVOLVEMENT IN JWS; VARIANT JWS ARG-252;

A common mutation in the fibroblast growth factor receptor 1 gene in Pfeiffer syndrome.
Muenke M.; Schell U.; Hehr A.; Robin N.H.; Losken H.W.; Schinzel A.; Pulleyn L.J.; Rutland P.; Reardon W.; Malcolm S.; Winter R.M.;
Nat. Genet. 8:269-274(1994)
Cited for: VARIANT PS ARG-252;

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P11362: Variant p.Pro252Arg