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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P00480: Variant p.Thr178Met

Ornithine transcarbamylase, mitochondrial
Gene: OTC
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Variant information Variant position: help 178 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Threonine (T) to Methionine (M) at position 178 (T178M, p.Thr178Met). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from medium size and polar (T) to medium size and hydrophobic (M) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In OTCD; neonatal. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 178 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 354 The length of the canonical sequence.
Location on the sequence: help PIINGLSDLYHPIQILADYL T LQEHYSSLKGLTLSWIGDGN The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         PIINGLSDLYHPIQILADYLTLQEHY---------SSLKGLTLSWIGDGN

Mouse                         PIVNGLSDLYHPIQILADYLTLQEHY---------GSLKGL

Rat                           PIVNGLSDLYHPIQILADYLTLQEHY---------GSLKGL

Bovine                        PIVNGLSDLYHPIQILADYLTLQEHY---------GSLKGL

Sheep                         PIVNGLSDLYHPIQILADYLTLQEHY---------GSLKGL

Chicken                       PVINGLSDLYHPLQILADYLTLQEHY---------GGLNGL

Baker's yeast                 PIINSLCDKFHPLQAICDLLTIIENFNISLDEVNKGINSKL

Fission yeast                 PVINGLCDTFHPLQALADLLTIKETF---------KSFDGL
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 33 – 354 Ornithine transcarbamylase, mitochondrial
Binding site 168 – 168
Binding site 171 – 171
Helix 169 – 183



Literature citations
No reference for the current variant in UniProtKB/Swiss-Prot.
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.