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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P08559: Variant p.Pro217Leu

Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial
Gene: PDHA1
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Variant information Variant position: help 217 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Proline (P) to Leucine (L) at position 217 (P217L, p.Pro217Leu). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Similar physico-chemical property. Both residues are medium size and hydrophobic. The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -3 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In PDHAD. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 217 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 390 The length of the canonical sequence.
Location on the sequence: help GAANQGQIFEAYNMAALWKL P CIFICENNRYGMGTSVERAA The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         GAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAA

Chimpanzee                    GAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAA

Mouse                         GAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAA

Rat                           GAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAA

Bovine                        GAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAA

Caenorhabditis elegans        GAANQGQLFEATNMAKLWDLPVLFVCENNGFGMGTTAERSS

Slime mold                    GAANQGQLFEAFNMASLWKLPVIFICENNKYGMGTSQKRST

Baker's yeast                 GASNQGQVFESFNMAKLWNLPVVFCCENNKYGMGTAASRSS

Fission yeast                 GASNQGQAFEAFNMAKLWGLPVIFACENNKYGMGTSAERSS
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 30 – 390 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial
Binding site 197 – 197
Binding site 197 – 197
Binding site 198 – 198
Binding site 198 – 198
Binding site 225 – 225
Binding site 225 – 225
Binding site 225 – 225
Binding site 227 – 227
Binding site 227 – 227
Modified residue 232 – 232 Phosphoserine; by PDK1
Mutagenesis 232 – 232 S -> A. Abolishes inactivation by phosphorylation; when associated with A-293 and A-300.



Literature citations
Pyruvate dehydrogenase complex deficiency due to a point mutation (P188L) within the thiamine pyrophosphate binding loop of the E1 alpha subunit.
Hemalatha S.G.; Kerr D.S.; Wexler I.D.; Lusk M.M.; Kaung M.; Du Y.; Kolli M.; Schelper R.L.; Patel M.S.;
Hum. Mol. Genet. 4:315-318(1995)
Cited for: VARIANT PDHAD LEU-217;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.