UniProtKB/Swiss-Prot P04637: Variant p.Pro153Thr

Cellular tumor antigen p53
Gene: TP53
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Variant information Variant position:

153 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

US The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Proline (P) to Threonine (T) at position 153 (P153T, p.Pro153Thr). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from medium size and hydrophobic (P) to medium size and polar (T) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

-1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Variant description:

In sporadic cancers; somatic mutation. Any additional useful information about the variant.

Sequence information Variant position:

153 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

393 The length of the canonical sequence.
Location on the sequence:

MFCQLAKTCPVQLWVDSTPP P GTRVRAMAIYKQSQHMTEVV The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         MFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVV

                              LFCQLAKTCPVQLWVSSPPPPNTCVRAMAIYKKSEFVTEVV

Rhesus macaque                MFCQLAKTCPVQLWVDSTPPPGSRVRAMAIYKQSQHMTEVV

Mouse                         LFCQLAKTCPVQLWVSATPPAGSRVRAMAIYKKSQHMTEVV

Rat                           LFCQLAKTCPVQLWVTSTPPPGTRVRAMAIYKKSQHMTEVV

Pig                           LFCQLAKTCPVQLWVSSPPPPGTRVRAMAIYKKSEYMTEVV

Bovine                        LFCQLAKTCPVQLWVDSPPPPGTRVRAMAIYKKLEHMTEVV

Rabbit                        LFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKKSQHMTEVV

Sheep                         LFCQLAKTCPVQLWVDSPPPPGTRVRAMAIYKKLEHMTEVV

Cat                           LFCQLAKTCPVQLWVRSPPPPGTCVRAMAIYKKSEFMTEVV

Chicken                       VYCRLAKPCPVQVRVGVAPPPGSSLRAVAVYKKSEHVAEVV

Xenopus laevis                LFCQLAKTCPLLVRVESPPPRGSILRATAVYKKSEHVAEVV

Zebrafish                     LFCQLAKTCPVQMVVDVAPPQGSVVRATAIYKKSEHVAEVV

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 393	Cellular tumor antigen p53
DNA binding	102 – 292
Region	1 – 320	Interaction with CCAR2
Region	100 – 370	Interaction with HIPK1
Region	100 – 300	Required for interaction with ZNF385A
Region	113 – 236	Required for interaction with FBXO42
Region	116 – 292	Interaction with AXIN1
Modified residue	139 – 139	N6-lactoyllysine

Literature citations
No reference for the current variant in UniProtKB/Swiss-Prot.

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.