UniProtKB/Swiss-Prot P45880: Variant p.Ala24Val

Voltage-dependent anion-selective channel protein 2
Gene: VDAC2
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Variant information Variant position:

24 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Alanine (A) to Valine (V) at position 24 (A24V, p.Ala24Val). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from small size and hydrophobic (A) to medium size and hydrophobic (V) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

0 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Sequence information Variant position:

24 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

294 The length of the canonical sequence.
Location on the sequence:

HGQTCARPMCIPPSYADLGK A ARDIFNKGFGFGLVKLDVKT The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         HGQT-CARPMCIPPSYADLGKAARDIFNKG-FGFGLVKLDVKT

Mouse                         CCVPVCPRPMCIPPPYADLGKAARDIFNKG-FGFGLVKLDV

Rat                           CCVPVCQRPICIPPPYADLGKAARDIFNKG-FGFGLVKLDV

Pig                           YGQT-CPRPMCIPPSYADLGKAARDIFNKG-FGFGLVKLDV

Bovine                        YGQN-CARPMCIPPSYADLGKAARDIFNKG-FGFGLVKLDV

Rabbit                        YGQP-CARPMCIPPSYADLGKAARDIFNKG-FGFGLVKLDV

Xenopus laevis                ----------AVPPSYADLGKSARDIFNKG-YGFGLVKLDV

Baker's yeast                 ------------LRFFNDISRDVNGLFNRDFFHTNPLSLNI

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	2 – 294	Voltage-dependent anion-selective channel protein 2
Binding site	23 – 23
Binding site	31 – 31
Modified residue	31 – 31	N6-acetyllysine; alternate
Modified residue	31 – 31	N6-succinyllysine; alternate
Cross	31 – 31	Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate

Literature citations
Cloning and functional expression in yeast of two human isoforms of the outer mitochondrial membrane channel, the voltage-dependent anion channel.
Blachly-Dyson E.; Zambronicz E.B.; Yu W.H.; Adams V.; McCabe E.R.; Adelman J.P.; Colombini M.; Forte M.A.;
J. Biol. Chem. 268:1835-1841(1993)
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 3); TISSUE SPECIFICITY; VARIANT VAL-24;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.