UniProtKB/SwissProt variant VAR

Variant information

Variant position:

413

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:

LP/P [Disclaimer]

The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Glycine (G) to Arginine (R) at position 413 (G413R, p.Gly413Arg).

Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:

Change from glycine (G) to large size and basic (R)

The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:

-2

The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Variant description:

In HEMB; moderate to severe.

Any additional useful information about the variant.

Other resources:

Links to websites of interest for the variant.

Variant rs1306658513 [ dbSNP | Ensembl ]

Sequence information

Variant position:

413

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:

461

The length of the canonical sequence.

Location on the sequence:

NMFCAGFHEGGRDSCQGDSG G PHVTEVEGTSFLTGIISWGE

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         NMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGE

                              NMFCAGFHEGGKDSCQGDSGGPHVTEVEGISFLTGIISWGE

Chimpanzee                    NMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGE

Mouse                         NMFCAGYREGGKDSCEGDSGGPHVTEVEGTSFLTGIISWGE

Rat                           NMFCAGYREGGKDSCEGDSGGPHVTEVEGTSFLTGIISWGE

Bovine                        HMFCAGYHEGGKDSCQGDSGGPHVTEVEGTSFLTGIISWGE

Cat                           NMFCAGFHEGGKDSCQGDSGGPHVTEVEGINFLTGIISWGE

Chicken                       SMFCAGYTAGGKDTCGGDSGGPYTNSIGETWFLTGVTSWGE

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	47 – 461	Coagulation factor IX
Chain	227 – 461	Coagulation factor IXa heavy chain
Domain	227 – 459	Peptidase S1
Active site	411 – 411	Charge relay system
Disulfide bond	407 – 435

Literature citations

Identification of mutations in four hemophilia B patients of Turkish origin, including a novel deletion of base 6411.
Caglayan S.H.; Vielhaber E.; Guersel T.; Aktuglu G.; Sommer S.S.;
Hum. Mutat. 4:163-165(1994)
Cited for: VARIANTS HEMB GLN-294 AND ARG-413;

Mutations associated with hemophilia B in Turkish patients.
Caglayan S.H.; Goekmen Y.; Aktuglu G.; Guergey A.; Sommer S.S.;
Hum. Mutat. 10:76-79(1997)
Cited for: VARIANTS HEMB LYS-113; MET-342; ARG-413 AND VAL-424;

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P00740: Variant p.Gly413Arg