UniProtKB/Swiss-Prot P00734: Variant p.Arg425Cys

Prothrombin
Gene: F2
Chromosomal location: 11p11-q12
Variant information

Variant position:  425
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  Disease [Disclaimer]
The variants are classified into three categories: Disease, Polymorphism and Unclassified.
  • Disease: Variants implicated in disease according to literature reports.
  • Polymorphism: Variants not reported to be implicated in disease.
  • Unclassified: Variants with uncertain implication in disease according to literature reports. Evidence against or in favor of a pathogenic role is limited and/or conflicting.

Residue change:  From Arginine (R) to Cysteine (C) at position 425 (R425C, p.Arg425Cys).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from large size and basic (R) to medium size and polar (C)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -3
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Involvement in disease:  Factor II deficiency (FA2D) [MIM:613679]: A very rare blood coagulation disorder characterized by mucocutaneous bleeding symptoms. The severity of the bleeding manifestations correlates with blood factor II levels. {ECO:0000269|PubMed:1349838, ECO:0000269|PubMed:1354985, ECO:0000269|PubMed:1421398, ECO:0000269|PubMed:14962227, ECO:0000269|PubMed:2719946, ECO:0000269|PubMed:3242619, ECO:0000269|PubMed:3567158, ECO:0000269|PubMed:3771562, ECO:0000269|PubMed:3801671, ECO:0000269|PubMed:6405779, ECO:0000269|PubMed:7792730, ECO:0000269|PubMed:7865694}. Note=The disease is caused by mutations affecting the gene represented in this entry.
The name and a short description of the disease associated with the variant. For more information about the disease, the user can refer to OMIM, following the link provided after the disease acronym.

Variant description:  In FA2D; Quick-1.
Any additional useful information about the variant.

Other resources:  
Links to websites of interest for the variant.



Sequence information

Variant position:  425
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  622
The length of the canonical sequence.

Location on the sequence:   AHCLLYPPWDKNFTENDLLV  R IGKHSRTRYERNIEKISMLE
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         AHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLE

Mouse                         AHCILYPPWDKNFTENDLLVRIGKHSRTRYERNVEKISMLE

Rat                           AHCILYPPWDKNFTENDLLVRIGKHSRTRYERNVEKISMLE

Pig                           AHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLE

Bovine                        AHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLD

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 44 – 622 Prothrombin
Chain 364 – 622 Thrombin heavy chain
Domain 364 – 618 Peptidase S1
Active site 406 – 406 Charge relay system
Glycosylation 416 – 416 N-linked (GlcNAc...) (complex) asparagine
Disulfide bond 336 – 482 Interchain (between light and heavy chains)
Beta strand 422 – 427


Literature citations

Identification of the primary structural defect in the dysthrombin thrombin Quick I: substitution of cysteine for arginine-382.
Henriksen R.A.; Mann K.G.;
Biochemistry 27:9160-9165(1988)
Cited for: VARIANT FA2D CYS-425; PARTIAL PROTEIN SEQUENCE;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.