UniProtKB/Swiss-Prot P00441: Variant p.His47Arg

• Variant information
• Sequence information
• Literature citations
• All

Variant information

Variant position: 47 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: LP/P [Disclaimer: Variants classification is intended for research purposes only, not for clinical and diagnostic use. The label disease variant is assigned according to literature reports on probable disease-association that can be based on theoretical reasons. This label must not be considered as a definitive proof for the pathogenic role of a variant.] The variants are classified into three categories: LP/P, LB/B and US.

• LP/P: likely pathogenic or pathogenic.
• LB/B: likely benign or benign.
• US: uncertain significance

Residue change: From Histidine (H) to Arginine (R) at position 47 (H47R, p.His47Arg). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: Change from medium size and polar (H) to large size and basic (R) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: 0 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

• Lowest score: -4 (low probability of substitution).
• Highest score: 11 (high probability of substitution).

More information can be found on the following page
Variant description: In ALS1; 80% of wild-type activity; ubiquitinated by RNF19A. Any additional useful information about the variant.
Other resources: Links to websites of interest for the variant.

• Variant rs121912443 [ dbSNP | Ensembl ]

Sequence information

Variant position: 47 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: 154 The length of the canonical sequence.
Location on the sequence: NGPVKVWGSIKGLTEGLHGF H VHEFGDNTAGCTSAGPHFNP The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Sequence annotation in neighborhood: The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

• Type: the type of sequence feature.
• Positions: endpoints of the sequence feature.
• Description: contains additional information about the feature.

Type	Positions	Description
Chain	2 – 154	Superoxide dismutase [Cu-Zn]
Binding site	47 – 47
Binding site	49 – 49
Binding site	64 – 64
Binding site	64 – 64
Cross	33 – 33	1-(tryptophan-3-yl)-tryptophan (Trp-Trp) (interchain with W-33)
Mutagenesis	58 – 58	C -> A. Exhibits very slow copper acquisition.
Mutagenesis	58 – 58	C -> S. Enhances formation of fibrillar aggregates in the absence of bound zinc; when associated with S-7; S-112 and S-147.
Beta strand	41 – 50

Literature citations

Amyloid-like filaments and water-filled nanotubes formed by SOD1 mutant proteins linked to familial ALS.
Elam J.S.; Taylor A.B.; Strange R.; Antonyuk S.; Doucette P.A.; Rodriguez J.A.; Hasnain S.S.; Hayward L.J.; Valentine J.S.; Yeates T.O.; Hart P.J.;
Nat. Struct. Biol. 10:461-467(2003)
Cited for: X-RAY CRYSTALLOGRAPHY (1.3 ANGSTROMS) OF VARIANTS ALS1 ASN-135 AND ARG-47; FORMATION OF FIBRILLAR AGGREGATES; Familial amyotrophic lateral sclerosis (ALS) in Japan associated with H46R mutation in Cu/Zn superoxide dismutase gene: a possible new subtype of familial ALS.
Aoki M.; Ogasawara M.; Matsubara Y.; Narisawa K.; Nakamura S.; Itoyama Y.; Abe K.;
J. Neurol. Sci. 126:77-83(1994)
Cited for: VARIANT ALS1 ARG-47; Variation in the biochemical/biophysical properties of mutant superoxide dismutase 1 enzymes and the rate of disease progression in familial amyotrophic lateral sclerosis kindreds.
Ratovitski T.; Corson L.B.; Strain J.; Wong P.; Cleveland D.W.; Culotta V.C.; Borchelt D.R.;
Hum. Mol. Genet. 8:1451-1460(1999)
Cited for: CHARACTERIZATION OF VARIANTS ALS1 VAL-5; ARG-38; ARG-47; GLN-49; ARG-86 AND THR-114; Dorfin ubiquitylates mutant SOD1 and prevents mutant SOD1-mediated neurotoxicity.
Niwa J.; Ishigaki S.; Hishikawa N.; Yamamoto M.; Doyu M.; Murata S.; Tanaka K.; Taniguchi N.; Sobue G.;
J. Biol. Chem. 277:36793-36798(2002)
Cited for: CHARACTERIZATION OF VARIANTS ALS1 ARG-38; ARG-47; ARG-86 AND ALA-94; INTERACTION WITH RNF19A; UBIQUITINATION;