UniProtKB/Swiss-Prot P00441: Variant p.Ile114Thr

• Variant information
• Sequence information
• Literature citations
• All

Variant information

Variant position: 114 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: LP/P [Disclaimer: Variants classification is intended for research purposes only, not for clinical and diagnostic use. The label disease variant is assigned according to literature reports on probable disease-association that can be based on theoretical reasons. This label must not be considered as a definitive proof for the pathogenic role of a variant.] The variants are classified into three categories: LP/P, LB/B and US.

• LP/P: likely pathogenic or pathogenic.
• LB/B: likely benign or benign.
• US: uncertain significance

Residue change: From Isoleucine (I) to Threonine (T) at position 114 (I114T, p.Ile114Thr). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: Change from medium size and hydrophobic (I) to medium size and polar (T) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: -1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

• Lowest score: -4 (low probability of substitution).
• Highest score: 11 (high probability of substitution).

More information can be found on the following page
Variant description: In ALS1; destabilizes dimeric protein structure and increases tendency to form fibrillar aggregates. Any additional useful information about the variant.
Other resources: Links to websites of interest for the variant.

• Variant rs121912441 [ dbSNP | Ensembl ]

Sequence information

Variant position: 114 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: 154 The length of the canonical sequence.
Location on the sequence: GVADVSIEDSVISLSGDHCI I GRTLVVHEKADDLGKGGNEE The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Sequence annotation in neighborhood: The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

• Type: the type of sequence feature.
• Positions: endpoints of the sequence feature.
• Description: contains additional information about the feature.

Type	Positions	Description
Chain	2 – 154	Superoxide dismutase [Cu-Zn]
Binding site	121 – 121
Modified residue	99 – 99	Phosphoserine
Modified residue	103 – 103	Phosphoserine
Modified residue	106 – 106	Phosphoserine
Modified residue	108 – 108	Phosphoserine
Modified residue	123 – 123	N6-acetyllysine; alternate
Modified residue	123 – 123	N6-succinyllysine; alternate
Disulfide bond	58 – 147
Mutagenesis	112 – 112	C -> S. Enhances formation of fibrillar aggregates in the absence of bound zinc; when associated with S-7; S-58 and S-147.
Mutagenesis	123 – 123	K -> A. Decreased succinylation.
Mutagenesis	123 – 123	K -> E. Mimicks constitutive succinylation state; decreased activity.
Mutagenesis	134 – 134	E -> Q. Abolishes dimerization; when associated with E-50 and E-51.
Beta strand	113 – 115

Literature citations

Two novel mutations in the gene for copper zinc superoxide dismutase in UK families with amyotrophic lateral sclerosis.
Enayat Z.E.; Orrell R.W.; Claus A.; Ludolph A.; Bachus R.; Brockmueller J.; Ray-Chaudhuri K.; Radunovic A.; Shaw C.; Wilkinson J.; King A.; Swash M.; Leigh P.N.; de Belleroche J.; Powell J.;
Hum. Mol. Genet. 4:1239-1240(1995)
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 25-56 AND 120-154; VARIANTS ALS1 GLN-49; ARG-94; THR-113; THR-114; HIS-126 AND THR-150; Dimer destabilization in superoxide dismutase may result in disease-causing properties: structures of motor neuron disease mutants.
Hough M.A.; Grossmann J.G.; Antonyuk S.V.; Strange R.W.; Doucette P.A.; Rodriguez J.A.; Whitson L.J.; Hart P.J.; Hayward L.J.; Valentine J.S.; Hasnain S.S.;
Proc. Natl. Acad. Sci. U.S.A. 101:5976-5981(2004)
Cited for: X-RAY CRYSTALLOGRAPHY (1.6 ANGSTROMS) OF VARIANTS ALS1 VAL-5 AND THR-114; CHARACTERIZATION OF VARIANTS ALS1 VAL-5 AND THR-114; Mutations in Cu/Zn superoxide dismutase gene are associated with familial amyotrophic lateral sclerosis.
Rosen D.R.; Siddique T.; Patterson D.; Figlewicz D.A.; Sapp P.; Hentati A.; Donaldson D.; Goto J.; O'Regan J.P.; Deng H.-X.; Rahmani Z.; Krizus A.; McKenna-Yasek D.; Cayabyab A.; Gaston S.M.; Berger R.; Tanzi R.E.; Halperin J.J.; Herzfeldt B.; van den Bergh R.; Hung W.-Y.; Bird T.; Deng G.; Mulder D.W.; Smyth C.; Laing N.G.; Soriano E.; Pericak-Vance M.A.; Haines J.; Rouleau G.A.; Gusella J.S.; Horvitz H.R.; Brown R.H. Jr.;
Nature 362:59-62(1993)
Cited for: VARIANTS ALS1 ARG-38; VAL-39; ASP-42; SER-42; ARG-44; ARG-86; ALA-94; CYS-94; GLY-101; VAL-107 AND THR-114; Amyotrophic lateral sclerosis and structural defects in Cu,Zn superoxide dismutase.
Deng H.-X.; Hentati A.; Tainer J.A.; Iqbal Z.; Cayabyab A.; Hung W.-Y.; Getzoff E.D.; Hu P.; Herzfeldt B.; Roos R.P.; Warner C.; Deng G.; Soriano E.; Smyth C.; Parge H.E.; Ahmed A.; Roses A.D.; Hallewell R.A.; Pericak-Vance M.A.; Siddique T.;
Science 261:1047-1051(1993)
Cited for: VARIANTS ALS1 VAL-5; ARG-38; VAL-39; ASP-42; SER-42; ARG-44; ARG-86; ALA-94; CYS-94; GLY-101; VAL-107; THR-114; PHE-145 AND GLY-149; 'Sporadic' motoneuron disease due to familial SOD1 mutation with low penetrance.
Suthers G.; Laing N.; Wilton S.; Dorosz S.; Waddy H.;
Lancet 344:1773-1773(1994)
Cited for: VARIANT ALS1 THR-114; Identification of new mutations in the Cu/Zn superoxide dismutase gene of patients with familial amyotrophic lateral sclerosis.
Pramatarova A.; Figlewicz D.A.; Krizus A.; Han F.Y.; Ceballos-Picot I.; Nicole A.; Dib M.; Meininger V.; Brown R.H. Jr.; Rouleau G.A.;
Am. J. Hum. Genet. 56:592-596(1995)
Cited for: VARIANTS ALS1 VAL-5; ARG-38; THR-114; LYS-140; PHE-145 AND THR-150; A missense mutation in the SOD1 gene in patients with amyotrophic lateral sclerosis from the Kii Peninsula and its vicinity, Japan.
Kikugawa K.; Nakano R.; Inuzuka T.; Kokubo Y.; Narita Y.; Kuzuhara S.; Yoshida S.; Tsuji S.;
Neurogenetics 1:113-115(1997)
Cited for: VARIANT ALS1 THR-114; Variation in the biochemical/biophysical properties of mutant superoxide dismutase 1 enzymes and the rate of disease progression in familial amyotrophic lateral sclerosis kindreds.
Ratovitski T.; Corson L.B.; Strain J.; Wong P.; Cleveland D.W.; Culotta V.C.; Borchelt D.R.;
Hum. Mol. Genet. 8:1451-1460(1999)
Cited for: CHARACTERIZATION OF VARIANTS ALS1 VAL-5; ARG-38; ARG-47; GLN-49; ARG-86 AND THR-114;