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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P03923: Variant p.Gly36Ser

NADH-ubiquinone oxidoreductase chain 6
Gene: MT-ND6
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Variant information Variant position: help 36 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Glycine (G) to Serine (S) at position 36 (G36S, p.Gly36Ser). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from glycine (G) to small size and polar (S) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 0 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In LHON. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 36 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 174 The length of the canonical sequence.
Location on the sequence: help FVGFSSKPSPIYGGLVLIVS G VVGCVIILNFGGGYMGLMVF The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         FVGFSSKPSPIYGGLVLIVSGVVGCVIILNFGGGY-MGLMVF

Gorilla                       FVGFSSKPSPIYGGLVLIVSGVVGCAIILNCGGGY-MGLMV

                              FVGFATKPSPIYGGLVLIISGGIGCAIVLNFGGSF-LGLMV

Chimpanzee                    FVGFSSKPSPIYGGLVLIVSGVVGCAIILNYGGGY-MGLMV

Mouse                         CLGLALKPSPIYGGLGLIVSGFVGCLMVLGFGGSF-LGLMV

Rat                           CLGLALKPSPIYGGLGLIVSGCIGCLMVLGFGGSF-LGLMV

Pig                           FVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSF-LGLMV

Bovine                        FVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSF-LGLMV

Rabbit                        FVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSF-LGLMM

Sheep                         FVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSF-LGLMV

Cat                           FVSFSSKPSPIYGGFGLIVAGGTGCGIVLNFGGSF-LGLMV

Horse                         FVGFSSKPSPIYGGLVLIVSGGVGCGIIMNFGGSF-LGLMV

Chicken                       VLAVASNPSPYYGVVGLVVASVMGCGWLVSLGVSF-VSLAL

Xenopus laevis                LVAVASNPSPFYAALGLVLAAGAGCLVIVSFGSSF-LSIVL

Zebrafish                     MIAIASNPAPYFAAFGLVVVAGVGCGILVSYGGSF-LSLIL

Caenorhabditis elegans        YINIDPMKSSFFLIFSLLFS-----MPVISMSMHIWFSYFI

Drosophila                    SIIFLNMIHPLALGLTLLIQTIFVCLLTGLMTKSFWYSYIL

Slime mold                    TLVILRSVNPIYSILNLIVIYGCYASILLTVEMEF-LACIY
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 174 NADH-ubiquinone oxidoreductase chain 6
Transmembrane 26 – 46 Helical



Literature citations
Leber's hereditary optic neuropathy: clinical and molecular genetic findings in a patient with a new mutation in the ND6 gene.
Besch D.; Leo-Kottler B.; Zrenner E.; Wissinger B.;
Graefes Arch. Clin. Exp. Ophthalmol. 237:745-752(1999)
Cited for: VARIANT LHON SER-36;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.