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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P04156: Variant p.Glu196Lys

Major prion protein
Gene: PRNP
Variant information Variant position: help 196 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change: help From Glutamate (E) to Lysine (K) at position 196 (E196K, p.Glu196Lys). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from medium size and acidic (E) to large size and basic (K) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description: help In CJD. Any additional useful information about the variant.

Sequence information Variant position: help 196 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 253 The length of the canonical sequence.
Location on the sequence: help VHDCVNITIKQHTVTTTTKG E NFTETDVKMMERVVEQMCIT The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences.

Gorilla                       VHDCVNITIKQHTVTTTTK--------GENFTETDV--KMM


Rhesus macaque                VHDCVNITIKQHTVTTTTK--------GENFTETDV--KMM

Chimpanzee                    VHDCVNITIKQHTVTTTTK--------GENFTETDV--KMM

Mouse                         VHDCVNITIKQHTVTTTTK--------GENFTETDV--KMM

Rat                           VHDCVNITIKQHTVTTTTK--------GENFTETDV--KMM

Pig                           VHDCVNITVKQHTVTTTTK--------GENFTETDV--KMI

Bovine                        VHDCVNITVKEHTVTTTTK--------GENFTETDI--KMM

Rabbit                        VHDCVNITVKQHTVTTTTK--------GENFTETDI--KIM

Goat                          VHDCVNITVKQHTVTTTTK--------GENFTETDI--KIM

Sheep                         VHDCVNITVKQHTVTTTTK--------GENFTETDI--KIM

Cat                           VHDCVNITVKQHTVTTTTK--------GENFTETDM--KIM


Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
Chain 23 – 230 Major prion protein
Region 23 – 230 Interaction with GRB2, ERI3 and SYN1
Glycosylation 181 – 181 N-linked (GlcNAc...) asparagine
Glycosylation 197 – 197 N-linked (GlcNAc...) asparagine
Disulfide bond 179 – 214
Beta strand 196 – 202

Literature citations
Identification of three novel mutations (E196K, V203I, E211Q) in the prion protein gene (PRNP) in inherited prion diseases with Creutzfeldt-Jakob disease phenotype.
Peoc'h K.; Manivet P.; Beaudry P.; Attane F.; Besson G.; Didier H.; Delasnerie-Laupretre N.; Laplanche J.-L.;
Hum. Mutat. 15:482-482(2000)
Cited for: VARIANTS CJD LYS-196; ILE-203 AND GLN-211;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.