UniProtKB/SwissProt variant VAR

Variant information

Variant position:

99

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:

LB/B

The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Serine (S) to Proline (P) at position 99 (S99P, p.Ser99Pro).

Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:

Change from small size and polar (S) to medium size and hydrophobic (P)

The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:

-1

The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Sequence information

Variant position:

99

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:

603

The length of the canonical sequence.

Location on the sequence:

SFKLDYFSMMFIPVALFVTW S IMEFSLWYMNSDPNINQFFK

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         SFKLDYFSMMFIPVALFVTWSIMEFSLWYMNSDPNINQFFK

Gorilla                       SFKLDYFSMMFIPVALFVTWSIMEFSLWYMNSDPNINQFFK

                              SFKLNYFSMIFVPVALFVTWSIMEFSMWYMHSDPYINRFFK

Chimpanzee                    SFKLDYFSMTFIPVALFVTWSIMEFSLWYMDSDPNINQFFK

Mouse                         SFKTDFFSILFTSVALFVTWSIMQFSSWYMHSDPNINRFIK

Rat                           SFKIDYFSILFLSVALFVTWSIMQFSSWYMHSDPHINRFIK

Pig                           SFKMDYFSVMFIPVALFVTWSIMEFSMWYMHSDPFINRFFK

Bovine                        SFKMDYFSMMFIPVALFVTWSIMEFSMWYMYSDPNINKFFK

Rabbit                        SFKLDYFSMLFTPIALFVTWSIMEFSMWYMHSDPKINQFFK

Sheep                         SFKMDFFSMMFVPVALFVTWSIMEFSMWYMHSDPNINQFFK

Cat                           SFKMDYFSTIFIPVALFVTWSIMEFSMWYMHSDPYINRFFK

Horse                         SFKLDYFSMIFVPVALFVTWSIMEFSLWYMHSDPYITRFFK

Chicken                       SLKMDMYSMMFFPIALFVTWSILEFATWYMASEPFITKFFT

                              SFKLDYFSMTFIPVALFVTWAIMEFSLWYMNSDPNINQFFK

Xenopus laevis                SFKFDIYSSIFIPIALFVTWSILEFATWYMASDPMISRFFK

Zebrafish                     SFKFDYYSVTFTSIALFITWSILEFASWYMASYPQKELFYK

Caenorhabditis elegans        KFNFYFNSILFSFILFLVTFSVLVFSTYYLNSELNFNYYYF

Drosophila                    TFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIM

Slime mold                    GLLYDSLTSIMIIVITCISSMVHLYSMDYMKEDPHKTRFFS

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 603	NADH-ubiquinone oxidoreductase chain 5
Transmembrane	87 – 107	Helical

Literature citations

Normal variants of human mitochondrial DNA and translation products: the building of a reference data base.
Marzuki S.; Noer A.S.; Lertrit P.; Thyagarajan D.; Kapsa R.; Utthanaphol P.; Byrne E.;
Hum. Genet. 88:139-145(1991)
Cited for: VARIANTS SER-17; SER-95; PRO-99; ASP-146; VAL-160; SER-165; SER-304; ALA-331 AND GLY-503;

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P03915: Variant p.Ser99Pro