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UniProtKB/Swiss-Prot P07949: Variant p.Met1064Thr

Proto-oncogene tyrosine-protein kinase receptor Ret
Gene: RET
Variant information

Variant position:  1064
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  LP/P [Disclaimer]
The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change:  From Methionine (M) to Threonine (T) at position 1064 (M1064T, p.Met1064Thr).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from medium size and hydrophobic (M) to medium size and polar (T)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -1
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description:  In HSCR1; familial form.
Any additional useful information about the variant.

Other resources:  
Links to websites of interest for the variant.



Sequence information

Variant position:  1064
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  1114
The length of the canonical sequence.

Location on the sequence:   NNAPLPRALPSTWIENKLYG  M SDPNWPGESPVPLTRADGTN
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         NNAPLPRALPSTWIENKLYGMSDPNWPGESPVPLTRADGTN

Mouse                         NNAPLPRSLPSTWIENKLYGMSDPNWPGESPVPLTRADGTS

Rat                           NSAPLPRSLPSTWIENKLYGMSDPNWPGESPVPLTRADGTS

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 29 – 1114 Proto-oncogene tyrosine-protein kinase receptor Ret
Topological domain 658 – 1114 Cytoplasmic
Modified residue 1062 – 1062 Phosphotyrosine; by autocatalysis
Alternative sequence 1064 – 1114 MSDPNWPGESPVPLTRADGTNTGFPRYPNDSVYANWMLSPSAAKLMDTFDS -> RISHAFTRF. In isoform 2.
Mutagenesis 708 – 1114 Missing. Loss of induced cell death, but increased cell aggregation.
Mutagenesis 1062 – 1062 Y -> F. Abolishes GFRAL-mediated MAPK1/MAPK2 phosphorylation.


Literature citations

RET mutational spectrum in Hirschsprung disease: evaluation of 601 Chinese patients.
So M.T.; Leon T.Y.; Cheng G.; Tang C.S.; Miao X.P.; Cornes B.K.; Diem N.N.; Cui L.; Ngan E.S.; Lui V.C.; Wu X.Z.; Wang B.; Wang H.; Yuan Z.W.; Huang L.M.; Li L.; Xia H.; Zhu D.; Liu J.; Nguyen T.L.; Chan I.H.; Chung P.H.; Liu X.L.; Zhang R.; Wong K.K.; Sham P.C.; Cherny S.S.; Tam P.K.; Garcia-Barcelo M.M.;
PLoS ONE 6:E28986-E28986(2011)
Cited for: VARIANTS HSCR1 549-LYS-GLY-550 DEL; CYS-114; HIS-114; GLY-145; LEU-155; PRO-175; ALA-278; PRO-278; ASN-300; GLN-313; ILE-316; LEU-339; TYR-353; GLN-360; MET-397; MET-412; ARG-423; LYS-480; GLN-595; LEU-679; GLN-694; SER-783; ARG-830; THR-907; LEU-961; VAL-1052; CYS-1062 AND THR-1064; VARIANTS ASN-278 AND MET-292;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.