Home  |  Contact

UniProtKB/Swiss-Prot P08559: Variant p.Arg10Pro

Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial
Gene: PDHA1
Variant information

Variant position:  10
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  Disease [Disclaimer]
The variants are classified into three categories: Disease, Polymorphism and Unclassified.
  • Disease: Variants implicated in disease according to literature reports.
  • Polymorphism: Variants not reported to be implicated in disease.
  • Unclassified: Variants with uncertain implication in disease according to literature reports. Evidence against or in favor of a pathogenic role is limited and/or conflicting.

Residue change:  From Arginine (R) to Proline (P) at position 10 (R10P, p.Arg10Pro).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from large size and basic (R) to medium size and hydrophobic (P)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -2
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description:  In PDHAD; affects mitochondrial import of precursor protein.
Any additional useful information about the variant.

Other resources:  
Links to websites of interest for the variant.

Sequence information

Variant position:  10
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  390
The length of the canonical sequence.

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         MRKMLAAVSRVLSGASQKPASR-----VLVASRNF

Chimpanzee                    MRKMLAAVSRVLSGASQKPASR-----VLV

Mouse                         MRKMLAAVSRVLAGSAQKPASR-----VLV

Rat                           MRKMLAAVSRVLAGAAQKPASR-----VLV

Bovine                        MRKMLAAVSRVLSGVAQKPASR-----VLV

Caenorhabditis elegans        ----MSLFARQLQSLTASG--I-----RTQ

Slime mold                    ---MLSNFLKVNSKA-------------LG

Baker's yeast                 --MLAASFKRQPSQLVRGLGAVLRTPTRIG

Fission yeast                 MFRTCTKIGTVPKVLVNQKGL-------ID

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

Transit peptide 1 – 29 Mitochondrion
Alternative sequence 19 – 19 P -> PRHGLATLPSLVSISRLKQSSHLGLPKCWDYSHSLKTRQ. In isoform 4.

Literature citations

An amino acid substitution in the pyruvate dehydrogenase E1 alpha gene, affecting mitochondrial import of the precursor protein.
Takakubo F.; Cartwright P.; Hoogenraad N.; Thorburn D.R.; Collins F.; Lithgow T.; Dahl H.-H.M.;
Am. J. Hum. Genet. 57:772-780(1995)
Cited for: VARIANT PDHAD PRO-10;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.