UniProtKB/Swiss-Prot P13647: Variant p.Pro25Leu

• Variant information
• Sequence information
• Literature citations
• All

Variant information

Variant position: 25 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: LP/P [Disclaimer: Variants classification is intended for research purposes only, not for clinical and diagnostic use. The label disease variant is assigned according to literature reports on probable disease-association that can be based on theoretical reasons. This label must not be considered as a definitive proof for the pathogenic role of a variant.] The variants are classified into three categories: LP/P, LB/B and US.

• LP/P: likely pathogenic or pathogenic.
• LB/B: likely benign or benign.
• US: uncertain significance

Residue change: From Proline (P) to Leucine (L) at position 25 (P25L, p.Pro25Leu). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: Similar physico-chemical property. Both residues are medium size and hydrophobic. The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: -3 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

• Lowest score: -4 (low probability of substitution).
• Highest score: 11 (high probability of substitution).

More information can be found on the following page
Variant description: In EBS2F. Any additional useful information about the variant.
Other resources: Links to websites of interest for the variant.

• Variant rs57499817 [ dbSNP | Ensembl ]

Sequence information

Variant position: 25 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: 590 The length of the canonical sequence.
Location on the sequence: SSVSFRSGGSRSFSTASAIT P SVSRTSFTSVSRSGGGGGGG The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Sequence annotation in neighborhood: The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

• Type: the type of sequence feature.
• Positions: endpoints of the sequence feature.
• Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 590	Keratin, type II cytoskeletal 5
Region	1 – 167	Head
Modified residue	5 – 5	Phosphoserine
Modified residue	8 – 8	Phosphoserine
Modified residue	16 – 16	Phosphoserine
Modified residue	21 – 21	Phosphoserine
Modified residue	24 – 24	Phosphothreonine; by CDK1
Modified residue	26 – 26	Phosphoserine
Modified residue	36 – 36	Phosphoserine

Literature citations

The genetic basis of epidermolysis bullosa simplex with mottled pigmentation.
Uttam J.; Hutton M.E.; Coulombe P.A.; Anton-Lamprecht I.; Yu Q.-C.; Gedde-Dahl T. Jr.; Fine J.-D.; Fuchs E.;
Proc. Natl. Acad. Sci. U.S.A. 93:9079-9084(1996)
Cited for: VARIANT EBS2F LEU-25; Epidermolysis bullosa simplex with mottled pigmentation: clinical aspects and confirmation of the P24L mutation in the KRT5 gene in further patients.
Moog U.; de Die-Smulders C.E.M.; Scheffer H.; van der Vlies P.; Henquet C.J.M.; Jonkman M.F.;
Am. J. Med. Genet. 86:376-379(1999)
Cited for: VARIANT EBS2F LEU-25; Epidermolysis bullosa simplex in Japanese and Korean patients: genetic studies in 19 cases.
Yasukawa K.; Sawamura D.; Goto M.; Nakamura H.; Jung S.-Y.; Kim S.-C.; Shimizu H.;
Br. J. Dermatol. 155:313-317(2006)
Cited for: VARIANTS EBS2C LEU-25; VAL-158 AND SER-352; VARIANTS EBS2B ASP-143; MET-186; LEU-186; PRO-191 AND ASP-517; VARIANTS EBS2A SER-176; LYS-475 AND LYS-477; VARIANT EBS2F LEU-25; Mutations in KRT5 and KRT14 cause epidermolysis bullosa simplex in 75% of the patients.
Bolling M.C.; Lemmink H.H.; Jansen G.H.; Jonkman M.F.;
Br. J. Dermatol. 164:637-644(2011)
Cited for: VARIANT EBS2F LEU-25; VARIANTS EBS2C PRO-149; PRO-151; GLY-170; SER-177; PRO-187; MET-199; GLY-323; LYS-329; HIS-331; GLU-404; ASN-443 AND ASP-476; VARIANTS EBS2B ASP-180 AND ASP-438; VARIANTS EBS2A PRO-180; PRO-191; MET-467 AND LYS-475; Two novel recessive mutations in KRT14 identified in a cohort of 21 Spanish families with epidermolysis bullosa simplex.
Garcia M.; Santiago J.L.; Terron A.; Hernandez-Martin A.; Vicente A.; Fortuny C.; De Lucas R.; Lopez J.C.; Cuadrado-Corrales N.; Holguin A.; Illera N.; Duarte B.; Sanchez-Jimeno C.; Llames S.; Garcia E.; Ayuso C.; Martinez-Santamaria L.; Castiglia D.; De Luca N.; Torrelo A.; Mechan D.; Baty D.; Zambruno G.; Escamez M.J.; Del Rio M.;
Br. J. Dermatol. 165:683-692(2011)
Cited for: VARIANTS EBS2C GLU-186; LYS-193; PRO-321; VAL-328 AND THR-428; VARIANTS EBS2A SER-165 AND LYS-477; VARIANT EBS2F LEU-25; VARIANT EBS2B PRO-463; Novel sporadic and recurrent mutations in KRT5 and KRT14 genes in Polish epidermolysis bullosa simplex patients: further insights into epidemiology and genotype-phenotype correlation.
Wertheim-Tysarowska K.; Oldak M.; Giza A.; Kutkowska-Kazmierczak A.; Sota J.; Przybylska D.; Wozniak K.; Sniegorska D.; Niepokoj K.; Sobczynska-Tomaszewska A.; Rygiel A.M.; Ploski R.; Bal J.; Kowalewski C.;
J. Appl. Genet. 57:175-181(2016)
Cited for: VARIANT EBS2F LEU-25; VARIANTS EBS2B ALA-143; LYS-170 AND MET-186; VARIANTS EPIDERMOLYSIS BULLOSA SIMPLEX PHE-143; LYS-190; MET-203; 470-TYR--SER-590 DEL AND GLY-477; VARIANT EBS2A 144-THR-VAL-145 DEL; VARIANTS EBS2C TYR-146; LYS-170; PHE-325; HIS-471 AND ASP-476;