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UniProtKB/Swiss-Prot Q13315: Variant p.Glu2904Gly

Serine-protein kinase ATM
Gene: ATM
Variant information

Variant position:  2904
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  LP/P [Disclaimer]
The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change:  From Glutamate (E) to Glycine (G) at position 2904 (E2904G, p.Glu2904Gly).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from medium size and acidic (E) to glycine (G)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -2
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description:  In AT.
Any additional useful information about the variant.

Other resources:  
Links to websites of interest for the variant.



Sequence information

Variant position:  2904
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  3056
The length of the canonical sequence.

Location on the sequence:   ELVHIDLGVAFEQGKILPTP  E TVPFRLTRDIVDGMGITGVE
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         ELVHIDLGVAFEQGKI-LPTPETVPFRLTRDIVDGMGITGVE-

Mouse                         ELVHIDLGVAFEQGKI-LPTPETVPFRLSRDIVDGMGITGV

Pig                           ELVHIDLGVAFEQGKI-LPTPETVPFRLTRDIVDGMGITGV

Caenorhabditis elegans        TFVHIDLGMILEYSKRTLPVPEQVPFRITRDVLDPILIEGI

Drosophila                    EVIHIDFGIAFEQGKI-QTTPETVPFRLTRDFVAPMGICGT

Baker's yeast                 EPIHIDLGIAFDQGKL-LPIPELVPFRLTRDIVDGFGVTGV

Fission yeast                 EVIHIDLGIAFEQGKK-LPVPECVPFRLTRDVVDGMGITGV

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 2 – 3056 Serine-protein kinase ATM
Domain 2686 – 2998 PI3K/PI4K catalytic
Region 2887 – 2911 Activation loop


Literature citations

Predominance of null mutations in ataxia-telangiectasia.
Gilad S.; Khosravi R.; Shkedy D.; Uziel T.; Ziv Y.; Savitsky K.; Rotman G.; Smith S.; Chessa L.; Jorgensen T.J.; Harnik R.; Frydman M.; Sanal O.; Portnoi S.; Goldwicz Z.; Jaspers N.G.J.; Gatti R.A.; Lenoir G.; Lavin M.F.; Tatsumi K.; Wegner R.-D.; Shiloh Y.; Bar-Shira A.;
Hum. Mol. Genet. 5:433-439(1996)
Cited for: VARIANTS 2427-LEU-ARG-2428 DEL; 2546-SER--ILE-2548 DEL; SER-2860 DEL AND GLY-2904;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.