UniProtKB/Swiss-Prot P00403: Variant p.Ala148Thr

Cytochrome c oxidase subunit 2
Gene: MT-CO2
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Variant information Variant position:

148 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Alanine (A) to Threonine (T) at position 148 (A148T, p.Ala148Thr). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from small size and hydrophobic (A) to medium size and polar (T) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

0 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources:

Links to websites of interest for the variant.

Variant rs1116904 [ dbSNP | Ensembl ]

Sequence information Variant position:

148 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

227 The length of the canonical sequence.
Location on the sequence:

LEPGDLRLLDVDNRVVLPIE A PIRMMITSQDVLHSWAVPTL The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         LEPGDLRLLDVDNRVVLPIEAPIRMMITSQDVLHSWAVPTL

Gorilla                       LEPGDLRLLDVDNRVVLPVEAPVRMMITSQDVLHSWAVPTL

                              LKPGELRLLEVDNRVVLPMEMTIRMLISSEDVLHSWAVPSL

Rhesus macaque                LNPGDLRLLEVDNRVVLPIEAPVRMMITSQDVLHSWTIPTL

Chimpanzee                    LEPGDLRLLDVDNRVVLPVEAPVRMMITSQDVLHSWAVPTL

Mouse                         LKPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSL

Rat                           LKPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSL

Pig                           LKPGEMRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSL

Bovine                        LKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSL

Rabbit                        LNPGDLRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSL

Goat                          LKPGELRLLEVDNRVVLPMEMTIRMLISSEDVLHSWAVPSL

Sheep                         LKPGELRLLEVDNRVVLPMEMTVRMLISSEDVLPSWAVPSL

Cat                           LKPGELRLLEVDNRVVLPMEMTIRMLISSEDVLHSWAVPSL

Horse                         LKPGELRLLEVDNRVVLPMEMTIRMLISSEDVLHSWAVPSL

Chicken                       LPLGHFRLLEVDHRIVIPMESPIRVIITADDVLHSWAVPAL

Xenopus laevis                LTPGQFRLLEVDNRMVVPMESPTRLLVTAEDVLHSWAVPSL

Zebrafish                     LTPGGFRLLETDHRMVVPKESPIRILVSAEDVLHSWAVPSL

Caenorhabditis elegans        LSLGEPRLLEVDNRCVIPCDTNIRFCITSADVIHAWALNSL

Drosophila                    LMTDGFRLLDVDNRVVLPMNSQIRILVTAADVIHSWTVPAL

Baker's yeast                 LEEGQLRLLDTDTSMVVPVDTHIRFVVTAADVIHDFAIPSL

Fission yeast                 LEEGSLRQLEVDNRLVLPIDTRIRLILTSGDVIHSWAVPSL

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 227	Cytochrome c oxidase subunit 2
Topological domain	88 – 227	Mitochondrial intermembrane
Binding site	161 – 161

Literature citations
Mitochondrial COII sequences and modern human origins.
Ruvolo M.; Zehr S.; von Dornum M.; Pan D.; Chang B.; Lin J.;
Mol. Biol. Evol. 10:1115-1135(1993)
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANTS VAL-30 AND THR-148;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.