UniProtKB/Swiss-Prot P03891: Variant p.Ile278Thr

NADH-ubiquinone oxidoreductase chain 2
Gene: MT-ND2
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Variant information Variant position:

278 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Isoleucine (I) to Threonine (T) at position 278 (I278T, p.Ile278Thr). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from medium size and hydrophobic (I) to medium size and polar (T) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

-1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources:

Links to websites of interest for the variant.

Variant rs878853115 [ dbSNP | Ensembl ]

Sequence information Variant position:

278 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

347 The length of the canonical sequence.
Location on the sequence:

TGFLPKWAIIEEFTKNNSLI I PTIMATITLLNLYFYLRLIY The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         TGFLPKWAIIEEFTKNNSLIIPTIMATITLLNLYFYLRLIY

Gorilla                       TGFLPKWLIIEEFTKNNDLITPTIMAIITLLNLYFYLRLIY

                              SGFIPKWMIIQELTKNNMIIIPTLMAITALLNLYFYLRLTY

Chimpanzee                    TGFLPKWVIIEEFTKNNSLIIPTIMAIITLLNLYFYLRLIY

Mouse                         TGFLPKWIIITELMKNNCLIMATLMAMMALLNLFFYTRLIY

Rat                           TGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYTRLIY

Pig                           SGFMPKWMIIQEMTKNESIIMPTLMAMTALLNLYFYMRLAY

Bovine                        SGFMPKWMIIQEMTKNNSIILPTFMAITALLNLYFYMRLTY

Rabbit                        TGFIPKWIIIQELTKNGNIILPTAMAMLALLNLYFYMRLIY

Goat                          SGFVPKWMIIQEMTKNNSIILPTLMAITALLNLYFYMRLTY

Sheep                         SGFMPKWMIIQEMTKNDSIILPTLMAITALLNLYFYMRLTY

Cat                           SGFIPKWMIIQELTKNELIMMPTLLAMTALLNLYFYMRLTY

Horse                         SGFMPKWMIIQELTKNSSIILPTLMAIMALLNLYFYMRLTY

Chicken                       TGFMPKWLIIQELTKQEMTPMATIITMLSLLSLFFYLRLAY

Xenopus laevis                SGFVPKWFIIQELTSQNTTILATTLALSALLSLFFYLRLTY

Zebrafish                     TGFMPKWLILQELTKQDLPATATIMALTALLSLFFYLRLCH

Caenorhabditis elegans        VSFFVKIFSLSEIFKYDSFFTLFLLFTMFLSVLAFSFWLIN

Drosophila                    LGFLPKWLVIQQLTLCNQYFMLTLMMMSTLITLFFYLRICY

Slime mold                    TNFISKIILILPLIVEGKIYITMIIFFLTVGIMIYYMNVV-

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 347	NADH-ubiquinone oxidoreductase chain 2
Transmembrane	274 – 294	Helical

Literature citations
Departure from neutrality at the mitochondrial NADH dehydrogenase subunit 2 gene in humans, but not in chimpanzees.
Wise C.A.; Sraml M.; Easteal S.;
Genetics 148:409-421(1998)
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANTS VAL-69; SER-88; ASP-150; MET-237; THR-265; VAL-265; THR-278 AND ALA-333;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.