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UniProtKB/Swiss-Prot O14960: Variant p.Ile58Val

Leukocyte cell-derived chemotaxin-2
Gene: LECT2
Variant information

Variant position:  58
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  LB/B
The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change:  From Isoleucine (I) to Valine (V) at position 58 (I58V, p.Ile58Val).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Similar physico-chemical property. Both residues are medium size and hydrophobic.
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  3
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Other resources:  
Links to websites of interest for the variant.



Sequence information

Variant position:  58
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  151
The length of the canonical sequence.

Location on the sequence:   RHGCGQYSAQRSQRPHQGVD  I LCSAGSTVYAPFTGMIVGQE
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         RHGCGQYSAQRSQRPHQGVDILCSAGSTVYAPFTGMIVGQE

Mouse                         SYGCGQYSAQRTQRHHPGVDVLCSDGSVVYAPFTGKIVGQE

Bovine                        GHGCGQYTAQRNQKLHQGVDVLCSDGSTVYAPFTGKIMGQE

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 19 – 151 Leukocyte cell-derived chemotaxin-2
Metal binding 53 – 53 Zinc
Metal binding 57 – 57 Zinc
Disulfide bond 25 – 60
Beta strand 55 – 59


Literature citations

Molecular cloning of human and bovine LECT2 having a neutrophil chemotactic activity and its specific expression in the liver.
Yamagoe S.; Mizuno S.; Suzuki K.;
Biochim. Biophys. Acta 1396:105-113(1998)
Cited for: NUCLEOTIDE SEQUENCE [MRNA]; VARIANT VAL-58; FUNCTION; INDUCTION BY PHYTOHEMAGGLUTININ; TISSUE SPECIFICITY;

Molecular cloning, structural characterization, and chromosomal mapping of the human LECT2 gene.
Yamagoe S.; Kameoka Y.; Hashimoto K.; Mizuno S.; Suzuki K.;
Genomics 48:324-329(1998)
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANT VAL-58;

Systemic expression of a newly recognized protein, LECT2, in the human body.
Nagai H.; Hamada T.; Uchida T.; Yamagoe S.; Suzuki K.;
Pathol. Int. 48:882-886(1998)
Cited for: NUCLEOTIDE SEQUENCE [MRNA]; VARIANT VAL-58; TISSUE SPECIFICITY;

Complete sequencing and characterization of 21,243 full-length human cDNAs.
Ota T.; Suzuki Y.; Nishikawa T.; Otsuki T.; Sugiyama T.; Irie R.; Wakamatsu A.; Hayashi K.; Sato H.; Nagai K.; Kimura K.; Makita H.; Sekine M.; Obayashi M.; Nishi T.; Shibahara T.; Tanaka T.; Ishii S.; Yamamoto J.; Saito K.; Kawai Y.; Isono Y.; Nakamura Y.; Nagahari K.; Murakami K.; Yasuda T.; Iwayanagi T.; Wagatsuma M.; Shiratori A.; Sudo H.; Hosoiri T.; Kaku Y.; Kodaira H.; Kondo H.; Sugawara M.; Takahashi M.; Kanda K.; Yokoi T.; Furuya T.; Kikkawa E.; Omura Y.; Abe K.; Kamihara K.; Katsuta N.; Sato K.; Tanikawa M.; Yamazaki M.; Ninomiya K.; Ishibashi T.; Yamashita H.; Murakawa K.; Fujimori K.; Tanai H.; Kimata M.; Watanabe M.; Hiraoka S.; Chiba Y.; Ishida S.; Ono Y.; Takiguchi S.; Watanabe S.; Yosida M.; Hotuta T.; Kusano J.; Kanehori K.; Takahashi-Fujii A.; Hara H.; Tanase T.-O.; Nomura Y.; Togiya S.; Komai F.; Hara R.; Takeuchi K.; Arita M.; Imose N.; Musashino K.; Yuuki H.; Oshima A.; Sasaki N.; Aotsuka S.; Yoshikawa Y.; Matsunawa H.; Ichihara T.; Shiohata N.; Sano S.; Moriya S.; Momiyama H.; Satoh N.; Takami S.; Terashima Y.; Suzuki O.; Nakagawa S.; Senoh A.; Mizoguchi H.; Goto Y.; Shimizu F.; Wakebe H.; Hishigaki H.; Watanabe T.; Sugiyama A.; Takemoto M.; Kawakami B.; Yamazaki M.; Watanabe K.; Kumagai A.; Itakura S.; Fukuzumi Y.; Fujimori Y.; Komiyama M.; Tashiro H.; Tanigami A.; Fujiwara T.; Ono T.; Yamada K.; Fujii Y.; Ozaki K.; Hirao M.; Ohmori Y.; Kawabata A.; Hikiji T.; Kobatake N.; Inagaki H.; Ikema Y.; Okamoto S.; Okitani R.; Kawakami T.; Noguchi S.; Itoh T.; Shigeta K.; Senba T.; Matsumura K.; Nakajima Y.; Mizuno T.; Morinaga M.; Sasaki M.; Togashi T.; Oyama M.; Hata H.; Watanabe M.; Komatsu T.; Mizushima-Sugano J.; Satoh T.; Shirai Y.; Takahashi Y.; Nakagawa K.; Okumura K.; Nagase T.; Nomura N.; Kikuchi H.; Masuho Y.; Yamashita R.; Nakai K.; Yada T.; Nakamura Y.; Ohara O.; Isogai T.; Sugano S.;
Nat. Genet. 36:40-45(2004)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]; VARIANT VAL-58;

The DNA sequence and comparative analysis of human chromosome 5.
Schmutz J.; Martin J.; Terry A.; Couronne O.; Grimwood J.; Lowry S.; Gordon L.A.; Scott D.; Xie G.; Huang W.; Hellsten U.; Tran-Gyamfi M.; She X.; Prabhakar S.; Aerts A.; Altherr M.; Bajorek E.; Black S.; Branscomb E.; Caoile C.; Challacombe J.F.; Chan Y.M.; Denys M.; Detter J.C.; Escobar J.; Flowers D.; Fotopulos D.; Glavina T.; Gomez M.; Gonzales E.; Goodstein D.; Grigoriev I.; Groza M.; Hammon N.; Hawkins T.; Haydu L.; Israni S.; Jett J.; Kadner K.; Kimball H.; Kobayashi A.; Lopez F.; Lou Y.; Martinez D.; Medina C.; Morgan J.; Nandkeshwar R.; Noonan J.P.; Pitluck S.; Pollard M.; Predki P.; Priest J.; Ramirez L.; Retterer J.; Rodriguez A.; Rogers S.; Salamov A.; Salazar A.; Thayer N.; Tice H.; Tsai M.; Ustaszewska A.; Vo N.; Wheeler J.; Wu K.; Yang J.; Dickson M.; Cheng J.-F.; Eichler E.E.; Olsen A.; Pennacchio L.A.; Rokhsar D.S.; Richardson P.; Lucas S.M.; Myers R.M.; Rubin E.M.;
Nature 431:268-274(2004)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]; VARIANT VAL-58;

The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
The MGC Project Team;
Genome Res. 14:2121-2127(2004)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]; VARIANT VAL-58;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.