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UniProtKB/Swiss-Prot P07686: Variant p.Ser255Arg

Beta-hexosaminidase subunit beta
Gene: HEXB
Variant information

Variant position:  255
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  LP/P [Disclaimer]
The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change:  From Serine (S) to Arginine (R) at position 255 (S255R, p.Ser255Arg).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from small size and polar (S) to large size and basic (R)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -1
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description:  In GM2G2.
Any additional useful information about the variant.

Other resources:  
Links to websites of interest for the variant.



Sequence information

Variant position:  255
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  556
The length of the canonical sequence.

Location on the sequence:   HWHIVDDQSFPYQSITFPEL  S NKGSYSLSHVYTPNDVRMVI
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         HWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVI

Mouse                         HWHIVDDQSFPYQSTTFPELSNKGSYSLSHVYTPNDVRMVL

Rat                           HWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDIHMVL

Pig                           HWHIVDDQSFPYQSINFGVLSSKGSYSLSHVYTPNDVRMVI

Cat                           HWHIVDDQSFPYQSVTFPELSNKGSYSLSHVYTPNDVHTVI

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 122 – 556 Beta-hexosaminidase subunit beta
Chain 122 – 311 Beta-hexosaminidase subunit beta chain B
Helix 253 – 258


Literature citations

Two mutations remote from an exon/intron junction in the beta-hexosaminidase beta-subunit gene affect 3'-splice site selection and cause Sandhoff disease.
Fujimaru M.; Tanaka A.; Choeh K.; Wakamatsu N.; Sakuraba H.; Isshiki G.;
Hum. Genet. 103:462-469(1998)
Cited for: VARIANT GM2G2 ARG-255;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.