UniProtKB/SwissProt variant VAR

Variant information

Variant position:

445

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:

LB/B

The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Proline (P) to Serine (S) at position 445 (P445S, p.Pro445Ser).

Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:

Change from medium size and hydrophobic (P) to small size and polar (S)

The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:

-1

The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Other resources:

Links to websites of interest for the variant.

Variant rs1063239 [ dbSNP | Ensembl ]

Sequence information

Variant position:

445

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:

474

The length of the canonical sequence.

Location on the sequence:

GQAATPETPQPSPPGGSGSE P YKLLPGAVATIVKPLSAIPQ

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         GQAATPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQ

Mouse                         GQAATPETPQPSPPSGSGSESYKLLPGAITTIVKPPSAIPQ

Rat                           GQAATPETPQPSPPSGSGSESYKLLPGAITTIVKPPSAIPQ

Xenopus laevis                ---STPETPQPSPPAGSGAEQYKIVHGTIASINKQPTSIPQ

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 474	Hepatocyte nuclear factor 4-alpha
Modified residue	429 – 429	Phosphothreonine
Modified residue	432 – 432	Phosphothreonine
Modified residue	436 – 436	Phosphoserine
Modified residue	458 – 458	N6-acetyllysine
Alternative sequence	378 – 474	SPSDAPHAHHPLHPHLMQEHMGTNVIVANTMPTHLSNGQMCEWPRPRGQAATPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQPTITKQEVI -> PCQAQEGRGWSGDSPGDRPHTVSSPLSSLASPLCRFGQVA. In isoform HNF4-Alpha-3 and isoform HNF4-Alpha-9.

Literature citations

Isolation and characterization of a third isoform of human hepatocyte nuclear factor 4.
Kritis A.A.; Argyrokastritis A.; Moschonas N.K.; Power S.; Katrakili N.; Zannis V.I.; Cereghini S.; Talianidis I.;
Gene 173:275-280(1996)
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS HNF4-ALPHA-1; HNF4-ALPHA-2 AND HNF4-ALPHA-3); VARIANT SER-445;

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P41235: Variant p.Pro445Ser