UniProtKB/Swiss-Prot P04000: Variant p.Met153Leu

Long-wave-sensitive opsin 1
Gene: OPN1LW
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Variant information Variant position:

153 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Methionine (M) to Leucine (L) at position 153 (M153L, p.Met153Leu). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Similar physico-chemical property. Both residues are medium size and hydrophobic. The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

2 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources:

Links to websites of interest for the variant.

Variant rs713 [ dbSNP | Ensembl ]

Sequence information Variant position:

153 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

364 The length of the canonical sequence.
Location on the sequence:

VSLCGITGLWSLAIISWERW M VVCKPFGNVRFDAKLAIVGI The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         VSLCGITGLWSLAIISWERWMVVCKPFGNVRFDAKLAIVGI

                              VSLCGITGLWSLAIISWERWLVVCKPFGNVRFDAKLAIAGI

Bovine                        VSLCGITGLWSLAIISWERWMVVCKPFGNVRFDAKLAITGI

Goat                          VSLCGITGLWSLAIISWERWMVVCKPFGNVRFDAKLATAGI

Cat                           VSLCGITGLWSLAIISWERWLVVCKPFGNVRFDAKLAIAGI

Horse                         VSLCGITGLWSLAIISWERWMVVCKPFGNVRFDAKLAVAGI

Chicken                       VSACGITALWSLAIISWERWFVVCKPFGNIKFDGKLAVAGI

Xenopus laevis                VSTCGITALWSLTVIAWERWFVVCKPFGNIKFDEKLAATGI

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 364	Long-wave-sensitive opsin 1
Topological domain	150 – 168	Cytoplasmic
Disulfide bond	126 – 203

Literature citations
Molecular genetics of human color vision: the genes encoding blue, green, and red pigments.
Nathans J.; Thomas D.; Hogness D.S.;
Science 232:193-202(1986)
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANTS LEU-153 AND SER-180; The DNA sequence of the human X chromosome.
Ross M.T.; Grafham D.V.; Coffey A.J.; Scherer S.; McLay K.; Muzny D.; Platzer M.; Howell G.R.; Burrows C.; Bird C.P.; Frankish A.; Lovell F.L.; Howe K.L.; Ashurst J.L.; Fulton R.S.; Sudbrak R.; Wen G.; Jones M.C.; Hurles M.E.; Andrews T.D.; Scott C.E.; Searle S.; Ramser J.; Whittaker A.; Deadman R.; Carter N.P.; Hunt S.E.; Chen R.; Cree A.; Gunaratne P.; Havlak P.; Hodgson A.; Metzker M.L.; Richards S.; Scott G.; Steffen D.; Sodergren E.; Wheeler D.A.; Worley K.C.; Ainscough R.; Ambrose K.D.; Ansari-Lari M.A.; Aradhya S.; Ashwell R.I.; Babbage A.K.; Bagguley C.L.; Ballabio A.; Banerjee R.; Barker G.E.; Barlow K.F.; Barrett I.P.; Bates K.N.; Beare D.M.; Beasley H.; Beasley O.; Beck A.; Bethel G.; Blechschmidt K.; Brady N.; Bray-Allen S.; Bridgeman A.M.; Brown A.J.; Brown M.J.; Bonnin D.; Bruford E.A.; Buhay C.; Burch P.; Burford D.; Burgess J.; Burrill W.; Burton J.; Bye J.M.; Carder C.; Carrel L.; Chako J.; Chapman J.C.; Chavez D.; Chen E.; Chen G.; Chen Y.; Chen Z.; Chinault C.; Ciccodicola A.; Clark S.Y.; Clarke G.; Clee C.M.; Clegg S.; Clerc-Blankenburg K.; Clifford K.; Cobley V.; Cole C.G.; Conquer J.S.; Corby N.; Connor R.E.; David R.; Davies J.; Davis C.; Davis J.; Delgado O.; Deshazo D.; Dhami P.; Ding Y.; Dinh H.; Dodsworth S.; Draper H.; Dugan-Rocha S.; Dunham A.; Dunn M.; Durbin K.J.; Dutta I.; Eades T.; Ellwood M.; Emery-Cohen A.; Errington H.; Evans K.L.; Faulkner L.; Francis F.; Frankland J.; Fraser A.E.; Galgoczy P.; Gilbert J.; Gill R.; Gloeckner G.; Gregory S.G.; Gribble S.; Griffiths C.; Grocock R.; Gu Y.; Gwilliam R.; Hamilton C.; Hart E.A.; Hawes A.; Heath P.D.; Heitmann K.; Hennig S.; Hernandez J.; Hinzmann B.; Ho S.; Hoffs M.; Howden P.J.; Huckle E.J.; Hume J.; Hunt P.J.; Hunt A.R.; Isherwood J.; Jacob L.; Johnson D.; Jones S.; de Jong P.J.; Joseph S.S.; Keenan S.; Kelly S.; Kershaw J.K.; Khan Z.; Kioschis P.; Klages S.; Knights A.J.; Kosiura A.; Kovar-Smith C.; Laird G.K.; Langford C.; Lawlor S.; Leversha M.; Lewis L.; Liu W.; Lloyd C.; Lloyd D.M.; Loulseged H.; Loveland J.E.; Lovell J.D.; Lozado R.; Lu J.; Lyne R.; Ma J.; Maheshwari M.; Matthews L.H.; McDowall J.; McLaren S.; McMurray A.; Meidl P.; Meitinger T.; Milne S.; Miner G.; Mistry S.L.; Morgan M.; Morris S.; Mueller I.; Mullikin J.C.; Nguyen N.; Nordsiek G.; Nyakatura G.; O'dell C.N.; Okwuonu G.; Palmer S.; Pandian R.; Parker D.; Parrish J.; Pasternak S.; Patel D.; Pearce A.V.; Pearson D.M.; Pelan S.E.; Perez L.; Porter K.M.; Ramsey Y.; Reichwald K.; Rhodes S.; Ridler K.A.; Schlessinger D.; Schueler M.G.; Sehra H.K.; Shaw-Smith C.; Shen H.; Sheridan E.M.; Shownkeen R.; Skuce C.D.; Smith M.L.; Sotheran E.C.; Steingruber H.E.; Steward C.A.; Storey R.; Swann R.M.; Swarbreck D.; Tabor P.E.; Taudien S.; Taylor T.; Teague B.; Thomas K.; Thorpe A.; Timms K.; Tracey A.; Trevanion S.; Tromans A.C.; d'Urso M.; Verduzco D.; Villasana D.; Waldron L.; Wall M.; Wang Q.; Warren J.; Warry G.L.; Wei X.; West A.; Whitehead S.L.; Whiteley M.N.; Wilkinson J.E.; Willey D.L.; Williams G.; Williams L.; Williamson A.; Williamson H.; Wilming L.; Woodmansey R.L.; Wray P.W.; Yen J.; Zhang J.; Zhou J.; Zoghbi H.; Zorilla S.; Buck D.; Reinhardt R.; Poustka A.; Rosenthal A.; Lehrach H.; Meindl A.; Minx P.J.; Hillier L.W.; Willard H.F.; Wilson R.K.; Waterston R.H.; Rice C.M.; Vaudin M.; Coulson A.; Nelson D.L.; Weinstock G.; Sulston J.E.; Durbin R.M.; Hubbard T.; Gibbs R.A.; Beck S.; Rogers J.; Bentley D.R.;
Nature 434:325-337(2005)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]; VARIANTS LEU-153 AND SER-180;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.