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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P34949: Variant p.Ser102Leu

Mannose-6-phosphate isomerase
Gene: MPI
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Variant information Variant position: help 102 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Serine (S) to Leucine (L) at position 102 (S102L, p.Ser102Leu). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from small size and polar (S) to medium size and hydrophobic (L) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -2 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In CDG1B. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 102 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 423 The length of the canonical sequence.
Location on the sequence: help LGSKVKDTFNGNLPFLFKVL S VETPLSIQAHPNKELAEKLH The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         LGSKVKDTF--NGNLPFLFKVLSVETPLSIQAHPNKELAEKLH

Chimpanzee                    LGSKVKDTF--NGNLPFLFKVLSVETPLSIQAHPNKELAEK

Mouse                         LGSKVKNTF--NGKLPFLFKVLSVDTALSIQAHPNKELAEK

Rat                           LGQKVKDTF--NGKLPFLFKVLSVETALSIQAHPNKELAEK

Bovine                        LGSKVKDTF--NGKLPFLFKVLSVETALSIQAHPNKELAEK

Caenorhabditis elegans        QGKHEK------GNLSFLFKVLSVLGPLSIQIHPTKEQGKL

Slime mold                    RGEIVEKRF--GNDFPFLFKVLSIRTALSIQAHPDSQLAQV

Baker's yeast                 LGKDIIDKFHATNELPFLFKVLSIEKVLSIQAHPDKALGKI

Fission yeast                 VGEKVYKKY--GKQLPFLFKVLSINKVLSIQAHPDKPLGKQ
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 2 – 423 Mannose-6-phosphate isomerase
Binding site 110 – 110
Binding site 112 – 112
Modified residue 102 – 102 Phosphoserine
Modified residue 108 – 108 Phosphoserine



Literature citations
Phosphomannose isomerase deficiency: a carbohydrate-deficient glycoprotein syndrome with hepatic-intestinal presentation.
Jaeken J.; Matthijs G.; Saudubray J.-M.; Dionisi-Vici C.; Bertini E.; de Lonlay P.; Henri H.; Carchon H.; Schollen E.; Van Schaftingen E.;
Am. J. Hum. Genet. 62:1535-1539(1998)
Cited for: VARIANTS CDG1B LEU-102 AND THR-138; FUNCTION; CATALYTIC ACTIVITY;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.