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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P01374: Variant p.His51Pro

Lymphotoxin-alpha
Gene: LTA
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Variant information Variant position: help 51 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LB/B The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change: help From Histidine (H) to Proline (P) at position 51 (H51P, p.His51Pro). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from medium size and polar (H) to medium size and hydrophobic (P) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -2 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Polymorphism: help A polymorphism in LTA accounts, in part, for susceptibility to leprosy linked to chromosome 6p21.3 (LPRS4) [MIM:610988]. Additional information on the polymorphism described.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 51 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 205 The length of the canonical sequence.
Location on the sequence: help GAQGLPGVGLTPSAAQTARQ H PKMHLAHSTLKPAAHLIGDP The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human                         GAQGLPGVGLTPSAAQTARQHPKMHLAHSTLKPAAHLIGDP

                              GAQGFPGVGISPSAARTAYQHPQKHFIQGTLKPAAHLIGDP

Rhesus macaque                GAQGLPGVGLTPSAAQTARQHPKMHLAHSTLKPAAHLIGDP

Chimpanzee                    GAQGLPGVGLTPSAAQTARQHPKMHLAHSTLKPAAHLIGDP

Mouse                         GAQGLSGVRF--SAARTAHPLPQKHLTHGILKPAAHLVGYP

Rat                           GAQGLSGVRF--SASRTAHQPPQKHLTHGLLKPAAHLVGYP

Pig                           EAQGLPGVGLPPSAAQPAHQHPPKHLARGTLKPAAHLVGDP

Bovine                        EAQGLRGIGLTPSAAQPAHQQLPTPFTRGTLKPAAHLVGDP

Rabbit                        GAQGLPGAEFPPSAARNAQQRLQKHFGHSTLKPAAHLVGDP

Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 35 – 205 Lymphotoxin-alpha
Glycosylation 41 – 41 O-linked (GalNAc...) threonine; partial



Literature citations
Submission
SeattleSNPs variation discovery resource;
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANTS ARG-13; PRO-51 AND ASN-60; Submission
NIEHS SNPs program;
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANTS ARG-13; PRO-51 AND ASN-60;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.