UniProtKB/Swiss-Prot P49711: Variant p.Arg339Trp

Transcriptional repressor CTCF
Gene: CTCF
Chromosomal location: 16q22.1
Variant information

Variant position:  339
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  Unclassified
The variants are classified into three categories: Disease, Polymorphism and Unclassified.
  • Disease: Variants implicated in disease according to literature reports.
  • Polymorphism: Variants not reported to be implicated in disease.
  • Unclassified: Variants with uncertain implication in disease according to literature reports. Evidence against or in favor of a pathogenic role is limited and/or conflicting.

Residue change:  From Arginine (R) to Tryptophan (W) at position 339 (R339W, p.Arg339Trp).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from large size and basic (R) to large size and aromatic (W)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -3
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description:  In a Wilms' tumor.
Any additional useful information about the variant.



Sequence information

Variant position:  339
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  727
The length of the canonical sequence.

Location on the sequence:   TRPHKCPDCDMAFVTSGELV  R HRRYKHTHEKPFKCSMCDYA
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         TRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYA

Mouse                         TRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYA

Rat                           TRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYA

Chicken                       TRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYA

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 1 – 727 Transcriptional repressor CTCF
Zinc finger 322 – 345 C2H2-type 3
Helix 334 – 344


Literature citations

Tumor-associated zinc finger mutations in the CTCF transcription factor selectively alter its DNA-binding specificity.
Filippova G.N.; Qi C.-F.; Ulmer J.E.; Moore J.M.; Ward M.D.; Hu Y.J.; Loukinov D.I.; Pugacheva E.M.; Klenova E.M.; Grundy P.E.; Feinberg A.P.; Cleton-Jansen A.-M.; Moerland E.W.; Cornelisse C.J.; Suzuki H.; Komiya A.; Lindblom A.; Dorion-Bonnet F.; Neiman P.E.; Morse H.C. III; Collins S.J.; Lobanenkov V.V.;
Cancer Res. 62:48-52(2002)
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANTS WILMS TUMOR TRP-339 AND GLN-448; VARIANT BREAST TUMOR GLU-344; VARIANT PROSTATE TUMOR ARG-345;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.