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UniProtKB/Swiss-Prot P08183: Variant p.Ser893Thr

ATP-dependent translocase ABCB1
Gene: ABCB1
Variant information

Variant position:  893
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  LB/B
The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change:  From Serine (S) to Threonine (T) at position 893 (S893T, p.Ser893Thr).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from small size and polar (S) to medium size and polar (T)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  1
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Polymorphism:  Genetic variation in ABCB1 may play a role in patients who do not respond to drug treatment.
Additional information on the polymorphism described.

Variant description:  Rare allele.
Any additional useful information about the variant.

Other resources:  
Links to websites of interest for the variant.

Sequence information

Variant position:  893
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  1280
The length of the canonical sequence.

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

Chain 1 – 1280 ATP-dependent translocase ABCB1
Topological domain 875 – 934 Cytoplasmic
Domain 711 – 1000 ABC transmembrane type-1 2
Helix 887 – 902

Literature citations

Frequency of single nucleotide polymorphisms in the P-glycoprotein drug transporter MDR1 gene in white subjects.
Cascorbi I.; Gerloff T.; Johne A.; Meisel C.; Hoffmeyer S.; Schwab M.; Schaeffeler E.; Eichelbaum M.; Brinkmann U.; Roots I.;
Clin. Pharmacol. Ther. 69:169-174(2001)
Cited for: VARIANTS ASP-21; ASN-400; ALA-893; THR-893 AND PRO-1107;

Three hundred twenty-six genetic variations in genes encoding nine members of ATP-binding cassette, subfamily B (ABCB/MDR/TAP), in the Japanese population.
Saito S.; Iida A.; Sekine A.; Miura Y.; Ogawa C.; Kawauchi S.; Higuchi S.; Nakamura Y.;
J. Hum. Genet. 47:38-50(2002)
Cited for: VARIANTS ALA-893 AND THR-893;

MDR1 Ala893 polymorphism is associated with inflammatory bowel disease.
Brant S.R.; Panhuysen C.I.M.; Nicolae D.; Reddy D.M.; Bonen D.K.; Karaliukas R.; Zhang L.; Swanson E.; Datta L.W.; Moran T.; Ravenhill G.; Duerr R.H.; Achkar J.-P.; Karban A.S.; Cho J.H.;
Am. J. Hum. Genet. 73:1282-1292(2003)

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.