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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P07954: Variant p.His180Arg

Fumarate hydratase, mitochondrial
Gene: FH
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Variant information Variant position: help 180 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Histidine (H) to Arginine (R) at position 180 (H180R, p.His180Arg). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from medium size and polar (H) to large size and basic (R) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 0 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In HLRCC. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 180 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 510 The length of the canonical sequence.
Location on the sequence: help RAIEMLGGELGSKIPVHPND H VNKSQSSNDTFPTAMHIAAA The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         RAIEMLGGELG-SKIPVHPNDHVNKSQSSNDTFPTAMHIAAA

Mouse                         RAIEMLGGELG-SKKPVHPNDHVNKSQSSNDTFPTAMHIAA

Rat                           RAIEMLGGELG-SKKPVHPNDHVNKSQSSNDTFPTAMHIAA

Pig                           RAIEMLGGELG-SKKPVHPNDHVNKSQSSNDTFPTAMHIAA

Zebrafish                     RAIEMLGGKLG-SKDPVHPNDHVNKSQSSNDTFPTAMHIAA

Caenorhabditis elegans        RAIEILGGELG-SKKPVHPNDHVNMSQSSNDTFPTAMHIAV

Slime mold                    RAIELMTGKRDFSKKLVHPNDHVNKSQSSNDTFPTCMHIAA

Baker's yeast                 RAIEILGGKIG--SKQVHPNNHCNQSQSSNDTFPTVMHIAA

Fission yeast                 RAIEILGGTLG-SKKPVHPNDHVNMSQSSNDTFPTVMHIAS
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 45 – 510 Fumarate hydratase, mitochondrial
Mutagenesis 187 – 187 S -> A. Does not affect phosphorylation by PRKDC.
Helix 177 – 181



Literature citations
Germline mutations in FH predispose to dominantly inherited uterine fibroids, skin leiomyomata and papillary renal cell cancer.
Tomlinson I.P.M.; Alam N.A.; Rowan A.J.; Barclay E.; Jaeger E.E.M.; Kelsell D.; Leigh I.; Gorman P.; Lamlum H.; Rahman S.; Roylance R.R.; Olpin S.; Bevan S.; Barker K.; Hearle N.; Houlston R.S.; Kiuru M.; Lehtonen R.; Karhu A.; Vilkki S.; Laiho P.; Eklund C.; Vierimaa O.; Aittomaeki K.; Hietala M.; Sistonen P.; Paetau A.; Salovaara R.; Herva R.; Launonen V.; Aaltonen L.A.;
Nat. Genet. 30:406-410(2002)
Cited for: VARIANTS HLRCC THR-107; PRO-117; ARG-180; ARG-185; ARG-230; HIS-233; VAL-282 AND ARG-328;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.