Variant position: 613 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: 672 The length of the canonical sequence.
Location on the sequence:
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human PLLLQEPLLSCVPHRYAQEV SRLCLLPAGTYKVVPSTYLPD
Mouse SLLLQEPLLSCVPHRYAQEV SRLCLLSVGNYRIVPSTYLPD
Rat SLLLQEPLLSCVPHCYAQEV SRLCLLSAGNYRIVPSTYLPD
Sequence annotation in neighborhood: The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
Type: the type of sequence feature. Positions: endpoints of the sequence feature. Description: contains additional information about the feature.
Type Positions Description
1 – 672 Calpain-10
513 – 654 Domain III 2
140 – 672 Missing. In isoform G.
275 – 672 Missing. In isoform F.
445 – 672 Missing. In isoform E.
514 – 672 Missing. In isoform D.
545 – 672 Missing. In isoform B.
Genetic variation in the gene encoding calpain-10 is associated with type 2 diabetes mellitus.
Horikawa Y.; Oda N.; Cox N.J.; Li X.; Orho-Melander M.; Hara M.; Hinokio Y.; Lindner T.H.; Mashima H.; Schwarz P.E.H.; del Bosque-Plata L.; Horikawa Y.; Oda Y.; Yoshiuchi I.; Colilla S.; Polonsky K.S.; Wei S.; Concannon P.; Iwasaki N.; Schulze J.; Baier L.J.; Bogardus C.; Groop L.; Boerwinkle E.; Hanis C.L.; Bell G.I.;
Nat. Genet. 26:163-175(2000)
Cited for: NUCLEOTIDE SEQUENCE [MRNA]; ALTERNATIVE SPLICING; VARIANTS THR-200; HIS-202; VAL-341; ALA-504; SER-529; ASN-613 AND VAL-666; INVOLVEMENT IN SUSCEPTIBILITY TO NIDDM1;
Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.