UniProtKB/Swiss-Prot P27695: Variant p.Ile64Val

DNA repair nuclease/redox regulator APEX1
Gene: APEX1
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Variant information Variant position:

64 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Isoleucine (I) to Valine (V) at position 64 (I64V, p.Ile64Val). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Similar physico-chemical property. Both residues are medium size and hydrophobic. The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

3 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources:

Links to websites of interest for the variant.

Variant rs2307486 [ dbSNP | Ensembl ]

Sequence information Variant position:

64 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

318 The length of the canonical sequence.
Location on the sequence:

LYEDPPDQKTSPSGKPATLK I CSWNVDGLRAWIKKKGLDWV The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         LYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWV

Gorilla                       LYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWV

Chimpanzee                    LYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWV

Mouse                         LYEDPPDQKTSPSGKSATLKICSWNVDGLRAWIKKKGLDWV

Rat                           LYEDPPDQKTSASGKSATLKICSWNVDGLRAWIKKKGLDWV

Bovine                        LYEDPPDQKTSPSGKSATLKICSWNVDGLRAWIKKKGLDWV

Zebrafish                     LYEDPPEKLTSKDGRAANMKITSWNVDGLRAWVKKNGLDWV

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	2 – 318	DNA repair nuclease/redox regulator APEX1
Chain	32 – 318	DNA repair nuclease/redox regulator APEX1, mitochondrial
Motif	64 – 80	Nuclear export signal (NES)
Binding site	68 – 68
Modified residue	54 – 54	Phosphoserine
Modified residue	65 – 65	S-nitrosocysteine; alternate
Mutagenesis	65 – 65	C -> A. Abolishes the redox activity. Does not abolish the AP endodeoxyribonuclease and phosphodiesterase activities. Reduces protection from granzyme A-mediated cell death; when associated with A-31 and A-210.
Mutagenesis	65 – 65	C -> S. Does not abolish NO-induced nitrosylation. Enhances NO-induced nuclear export.
Mutagenesis	68 – 68	N -> A. Nearly abolishes AP endodeoxyribonuclease activity.
Mutagenesis	70 – 70	D -> A. Strongly reduces AP endodeoxyribonuclease activity.
Beta strand	62 – 68

Literature citations
Submission
NIEHS SNPs program;
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANTS HIS-51; VAL-64 AND GLU-148;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.