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UniProtKB/Swiss-Prot Q9UI17: Variant p.Ser646Pro

Dimethylglycine dehydrogenase, mitochondrial
Gene: DMGDH
Variant information

Variant position:  646
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  Polymorphism
The variants are classified into three categories: Disease, Polymorphism and Unclassified.
  • Disease: Variants implicated in disease according to literature reports.
  • Polymorphism: Variants not reported to be implicated in disease.
  • Unclassified: Variants with uncertain implication in disease according to literature reports. Evidence against or in favor of a pathogenic role is limited and/or conflicting.

Residue change:  From Serine (S) to Proline (P) at position 646 (S646P, p.Ser646Pro).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from small size and polar (S) to medium size and hydrophobic (P)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -1
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Other resources:  
Links to websites of interest for the variant.



Sequence information

Variant position:  646
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  866
The length of the canonical sequence.

Location on the sequence:   ELGVLGVAGPQARKVLQKLT  S EDLSDDVFKFLQTKSLKVSN
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         ELGVLGVAGPQARKVLQKLTSEDLSDDVFKFLQTKSLKVSN

Mouse                         EFGVLGVAGPYARRVLQKLTSEDLSDDAFKFLQTKSFNISD

Rat                           ELGVLGVAGPYARRVLQKLTSEDLSDDVFKFLQTKSLKISD

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 51 – 866 Dimethylglycine dehydrogenase, mitochondrial
Modified residue 655 – 655 N6-acetyllysine; alternate
Modified residue 655 – 655 N6-succinyllysine; alternate


Literature citations

Cloning of dimethylglycine dehydrogenase and a new human inborn error of metabolism, dimethylglycine dehydrogenase deficiency.
Binzak B.A.; Wevers R.A.; Moolenaar S.H.; Lee Y.-M.; Hwu W.-L.; Poggi-Bach J.; Engelke U.F.H.; Hoard H.M.; Vockley J.G.; Vockley J.;
Am. J. Hum. Genet. 68:839-847(2001)
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1); VARIANTS GLY-530 AND PRO-646; VARIANT DMGDHD ARG-109;

An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.
Bian Y.; Song C.; Cheng K.; Dong M.; Wang F.; Huang J.; Sun D.; Wang L.; Ye M.; Zou H.;
J. Proteomics 96:253-262(2014)
Cited for: VARIANT [LARGE SCALE ANALYSIS] PRO-646; IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS];

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.