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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P12271: Variant p.Arg234Trp

Retinaldehyde-binding protein 1
Gene: RLBP1
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Variant information Variant position: help 234 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Arginine (R) to Tryptophan (W) at position 234 (R234W, p.Arg234Trp). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from large size and basic (R) to large size and aromatic (W) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -3 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In BRD. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 234 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 317 The length of the canonical sequence.
Location on the sequence: help SLRTSDLRKMVDMLQDSFPA R FKAIHFIHQPWYFTTTYNVV The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         SLRTSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVV

Mouse                         GLRPSDLKKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVV

Bovine                        GLRPSDLRKMVDMLQDSFPARFKAIHFIYQPWYFTTTYNVV

Chicken                       GIKPSELKKMVDMLQDSFPARFKAVHFIHQPWYFTTTYNVV
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 2 – 317 Retinaldehyde-binding protein 1
Domain 136 – 297 CRAL-TRIO
Turn 232 – 234



Literature citations
Bothnia dystrophy is caused by domino-like rearrangements in cellular retinaldehyde-binding protein mutant R234W.
He X.; Lobsiger J.; Stocker A.;
Proc. Natl. Acad. Sci. U.S.A. 106:18545-18550(2009)
Cited for: X-RAY CRYSTALLOGRAPHY (1.69 ANGSTROMS) OF 2-317 OF WILD-TYPE AND MUTANT TRP-234 IN COMPLEX WITH 11-CIS-RETINAL; FUNCTION; TISSUE SPECIFICITY; RETINAL-BINDING SITES; Bothnia dystrophy caused by mutations in the cellular retinaldehyde-binding protein gene (RLBP1) on chromosome 15q26.
Burstedt M.S.; Sandgren O.; Holmgren G.; Forsman-Semb K.;
Invest. Ophthalmol. Vis. Sci. 40:995-1000(1999)
Cited for: VARIANT BRD TRP-234;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.