Expasy logo

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q96L73: Variant p.Cys1925Arg

Histone-lysine N-methyltransferase, H3 lysine-36 specific
Gene: NSD1
Feedback?
Variant information Variant position: help 1925 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Cysteine (C) to Arginine (R) at position 1925 (C1925R, p.Cys1925Arg). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from medium size and polar (C) to large size and basic (R) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -3 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In SOTOS. Any additional useful information about the variant.


Sequence information Variant position: help 1925 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 2696 The length of the canonical sequence.
Location on the sequence: help CGIDSECINRMLLYECHPTV C PAGGRCQNQCFSKRQYPEVE The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         CGIDSECINRMLLYECHPTVCPAGGRCQNQCFSKRQYPEVE

Mouse                         CGIDSECINRMLLYECHPTVCPAGVRCQNQCFSKRQYPDVE
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 2696 Histone-lysine N-methyltransferase, H3 lysine-36 specific
Domain 1890 – 1940 AWS
Mutagenesis 1914 – 1914 R -> C. Reduced enzyme activity.



Literature citations
NSD1 mutations are the major cause of Sotos syndrome and occur in some cases of Weaver syndrome but are rare in other overgrowth phenotypes.
Douglas J.; Hanks S.; Temple I.K.; Davies S.; Murray A.; Upadhyaya M.; Tomkins S.; Hughes H.E.; Cole T.R.P.; Rahman N.;
Am. J. Hum. Genet. 72:132-143(2003)
Cited for: VARIANTS SOTOS LEU-1616; PRO-1637; TRP-1674; VAL-1792; ARG-1925; GLN-2005; GLN-2017; GLN-2143 AND SER-2183; VARIANTS LEU-614; THR-691; PRO-726; PRO-1036; ILE-1091; ILE-2250 AND THR-2261;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.