UniProtKB/Swiss-Prot O15381: Variant p.Cys359Gly

Nuclear valosin-containing protein-like
Gene: NVL
Feedback?

Variant information Variant position:

359 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Cysteine (C) to Glycine (G) at position 359 (C359G, p.Cys359Gly). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from medium size and polar (C) to glycine (G) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

-3 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Sequence information Variant position:

359 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

856 The length of the canonical sequence.
Location on the sequence:

SGESEQKLRELFEQAVSNAP C IIFIDEIDAITPKREVASKD The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         SGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVASKD

Mouse                         SGESEQKLRELFDQAVSNAPCIVFIDEIDAITPKREVASKD

Slime mold                    SGESEARVRTLFSNAIAQAPCIIFIDEIDAIAPKRESASKD

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 856	Nuclear valosin-containing protein-like
Region	267 – 474	Interaction with WDR74
Mutagenesis	365 – 365	E -> Q. Decreases 60S ribosomes synthesis. Strongly decreases 60S ribosomal subunit synthesis, enhances interaction with WDR74 and increases association of WDR74 and MTREX as well as induces partial migration of WDR74 to the nucleoplasm; when associated with Q-682.

Literature citations
NVL: a new member of the AAA family of ATPases localized to the nucleus.
Germain-Lee E.L.; Obie C.; Valle D.;
Genomics 44:22-34(1997)
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2); VARIANT GLY-359; PHOSPHORYLATION; SUBCELLULAR LOCATION; TISSUE SPECIFICITY;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.