UniProtKB/SwissProt variant VAR

Variant information

Variant position:

352

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:

LP/P [Disclaimer]

The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Tyrosine (Y) to Cysteine (C) at position 352 (Y352C, p.Tyr352Cys).

Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:

Change from large size and aromatic (Y) to medium size and polar (C)

The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:

-2

The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Variant description:

In ACADMD.

Any additional useful information about the variant.

Other resources:

Links to websites of interest for the variant.

Variant rs1227800781 [ dbSNP | Ensembl ]

Sequence information

Variant position:

352

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:

421

The length of the canonical sequence.

Location on the sequence:

LARMSYQRAAWEVDSGRRNT Y YASIAKAFAGDIANQLATDA

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         LARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDA

Chimpanzee                    LARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDA

Mouse                         LARLSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDA

Rat                           LARLSYQRAAWEVDSGRRNTYFASIAKAFAGDIANQLATDA

Pig                           LARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDA

Bovine                        LARLSYQRAAWEVDSGRRNTYYASIAKAYAGDIANQLASDA

Caenorhabditis elegans        LARLITYKSANDVDNKVRSSYNASIAKCFAADTANQAATNA

Drosophila                    TSRLAWRLSAWEIDQGRRNSYYASIAKCHAADMANKIASDA

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	26 – 421	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial
Binding site	351 – 351	Substrate
Modified residue	351 – 351	Phosphothreonine
Helix	351 – 376

Literature citations

The molecular basis of medium-chain acyl-CoA dehydrogenase (MCAD) deficiency in compound heterozygous patients: is there correlation between genotype and phenotype?
Andresen B.S.; Bross P.; Udvari S.; Kirk J.; Gray G.; Kmoch S.; Chamoles N.; Knudsen I.; Winter V.; Wilcken B.; Yokota I.; Hart K.; Packman S.; Harpey J.P.; Saudubray J.-M.; Hale D.E.; Bolund L.; Koelvraa S.; Gregersen N.;
Hum. Mol. Genet. 6:695-707(1997)
Cited for: VARIANTS ACADMD TYR-116; ALA-193 AND CYS-352;

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P11310: Variant p.Tyr352Cys