UniProtKB/Swiss-Prot P37231: Variant p.Pro40Ala

Peroxisome proliferator-activated receptor gamma
Gene: PPARG
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Variant information Variant position:

40 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Proline (P) to Alanine (A) at position 40 (P40A, p.Pro40Ala). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from medium size and hydrophobic (P) to small size and hydrophobic (A) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

-1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Polymorphism:

Genetic variations in PPARG define the body mass index quantitative trait locus 1 (BMIQ1) [MIM:606641]. The body max index (BMI) reflects the amount of fat, lean mass, and body build.Genetic variations in PPARG influence the carotid intimal medial thickness (CIMT) [MIM:609338]. CIMT is a measure of atherosclerosis that is independently associated with traditional atherosclerotic cardiovascular disease risk factors and coronary atherosclerotic burden. 35 to 45% of the variability in multivariable-adjusted CIMT is explained by genetic factors. - Additional information on the polymorphism described.
Other resources:

Links to websites of interest for the variant.

Variant rs1805192 [ dbSNP | Ensembl ]

Sequence information Variant position:

40 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

505 The length of the canonical sequence.
Location on the sequence:

TLSANISQEMTMVDTEMPFW P TNFGISSVDLSVMEDHSHSF The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         TLSANISQEMTMVDTEMPFWPT-NFGISSVDLSVMEDHSHSF

                              TLSASTSQETTMVDTEMPFWPT-NFGISSVDLSVMDDHSHS

Rhesus macaque                TLSANISQEITMVDTEMPFWPT-NFGISSVDLSVMDDHSHS

Mouse                         ALPMSTSQEITMVDTEMPFWPT-NFGISSVDLSVMEDHSHS

Rat                           ALPMSTSQEITMVDTEMPFWPT-NFGISSVDLSVMDDHSHS

Pig                           TLSANISQEVTMVDTEMPFWPT-NFGISSVDLSVMDDHSHS

Bovine                        TVSARTSQEITMVDTEMPFWPT-NFGISSVDLSMMDDHSHA

Rabbit                        -----------MVDTEMPFWPT-NFGIGSVDLSVMDDHSHS

Xenopus laevis                -----------MVDTEMPFWSNLNFGMNSMDMSALEDHCQP

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 505	Peroxisome proliferator-activated receptor gamma

Literature citations
No reference for the current variant in UniProtKB/Swiss-Prot.

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.