UniProtKB/Swiss-Prot P02647: Variant p.Thr92Ile

Apolipoprotein A-I
Gene: APOA1
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Variant information Variant position:

92 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Threonine (T) to Isoleucine (I) at position 92 (T92I, p.Thr92Ile). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from medium size and polar (T) to medium size and hydrophobic (I) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

-1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Polymorphism:

Genetic variations in APOA1 can result in APOA1 deficiency and are associated with low levels of HDL cholesterol [MIM:107680]. Additional information on the polymorphism described.
Variant description:

Confirmed at protein level. Any additional useful information about the variant.
Other resources:

Links to websites of interest for the variant.

Variant rs766422306 [ dbSNP | Ensembl ]

Sequence information Variant position:

92 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

267 The length of the canonical sequence.
Location on the sequence:

DNWDSVTSTFSKLREQLGPV T QEFWDNLEKETEGLRQEMSK The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         DNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSK

Gorilla                       DNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSK

                              DNWDSLSSTVTKLREQIGPVTQEFWDNLEKETEVLRQEMSK

Rhesus macaque                DNWDSVTSTVSKLREQLGPVTQEFWDNLEKETEGLRQEMSK

Chimpanzee                    DNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSK

Mouse                         ENWDTLGSTVSQLQERLGPLTRDFWDNLEKETDWVRQEMNK

Rat                           DNWDTLGSTVGRLQEQLGPVTQEFWANLEKETDWLRNEMNK

Pig                           DNWDSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSK

Bovine                        DNWDTLASTLSKVREQLGPVTQEFWDNLEKETASLRQEMHK

Rabbit                        DNWDSLSSTVSKLQEQLGPVTQEFWDNLEKETEGLREEMNK

Chicken                       DNLDTLSAAAAKLREDMAPYYKEVREMWLKDTEALRAELTK

Zebrafish                     ESLTKLQEYAQTTSQALTPYAETISTQLMENTKQLRERVMT

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	19 – 267	Proapolipoprotein A-I
Chain	25 – 267	Apolipoprotein A-I
Chain	25 – 266	Truncated apolipoprotein A-I
Repeat	90 – 111	2
Region	68 – 267	10 X approximate tandem repeats
Modified residue	110 – 110	Methionine sulfoxide
Helix	82 – 110

Literature citations
Association of extreme blood lipid profile phenotypic variation with 11 reverse cholesterol transport genes and 10 non-genetic cardiovascular disease risk factors.
Morabia A.; Cayanis E.; Costanza M.C.; Ross B.M.; Flaherty M.S.; Alvin G.B.; Das K.; Gilliam T.C.;
Hum. Mol. Genet. 12:2733-2743(2003)
Cited for: VARIANT ILE-92; Quantitative detection of single amino acid polymorphisms by targeted proteomics.
Su Z.D.; Sun L.; Yu D.X.; Li R.X.; Li H.X.; Yu Z.J.; Sheng Q.H.; Lin X.; Zeng R.; Wu J.R.;
J. Mol. Cell Biol. 3:309-315(2011)
Cited for: VARIANT ILE-92; IDENTIFICATION BY MASS SPECTROMETRY;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.