UniProtKB/SwissProt variant VAR

Variant information

Variant position:

358

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:

LP/P [Disclaimer]

The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Cysteine (C) to Serine (S) at position 358 (C358S, p.Cys358Ser).

Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:

Change from medium size and polar (C) to small size and polar (S)

The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:

-1

The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Variant description:

In HNSCC.

Any additional useful information about the variant.

Sequence information

Variant position:

358

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:

422

The length of the canonical sequence.

Location on the sequence:

EREASPADLPIDPNEPTYCL C NQVSYGEMIGCDNDECPIEW

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         EREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEW

Mouse                         EREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEW

Slime mold                    NANPNDLDLAIDPNEPTYCFCNRVSFGEMVGCENPDCKIEW

Fission yeast                 NEMVSEEDM--EEDNEKYCFCQQGSYGQMVACDNANCEREW

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 422	Inhibitor of growth protein 1
Zinc finger	353 – 402	PHD-type
Binding site	356 – 356
Binding site	358 – 358
Binding site	369 – 369
Binding site	374 – 374
Site	355 – 355	Histone H3K4me3 binding
Site	366 – 366	Histone H3K4me3 binding
Site	370 – 370	Histone H3K4me3 binding
Site	378 – 378	Histone H3K4me3 binding
Mutagenesis	378 – 378	W -> A. Unable to stimulate DNA repair after UV irradiation or promote DNA-damage-induced apoptosis.
Turn	356 – 359

Literature citations

Genomic structure of the human ING1 gene and tumor-specific mutations detected in head and neck squamous cell carcinomas.
Gunduz M.; Ouchida M.; Fukushima K.; Hanafusa H.; Etani T.; Nishioka S.; Nishizaki K.; Shimizu K.;
Cancer Res. 60:3143-3146(2000)
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORMS 1; 2; 3 AND 5); VARIANTS HNSCC ARG-125; ASP-335; SER-358 AND SER-359;

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q9UK53: Variant p.Cys358Ser