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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P04264: Variant p.Ile479Thr

Keratin, type II cytoskeletal 1
Gene: KRT1
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Variant information Variant position: help 479 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Isoleucine (I) to Threonine (T) at position 479 (I479T, p.Ile479Thr). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from medium size and hydrophobic (I) to medium size and polar (T) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In AEI2 and EHK1. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 479 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 644 The length of the canonical sequence.
Location on the sequence: help ARLLRDYQELMNTKLALDLE I ATYRTLLEGEESRMSGECAP The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         ARLLRDYQELMNTKLALDLEIATYRTLLEGEESRMSGECAP

                              ARLLRDYQELMNTKLALDMEIATYRTLLEGEESRMSGECAP

Chimpanzee                    ARLLRDYQELMNTKLALDLEIATYRTLLEGEESRMSGECAP

Mouse                         ARLLRDFQELMNTKLALDMEIATYKKLLEGEEIRMSGECTP

Rat                           TRLLRDYQELMNTKLALDMEIATYRKLLEGEEIRMSGECTP
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 2 – 644 Keratin, type II cytoskeletal 1
Domain 180 – 493 IF rod
Region 351 – 489 Coil 2
Helix 384 – 488



Literature citations
Cyclic ichthyosis with epidermolytic hyperkeratosis: a phenotype conferred by mutations in the 2B domain of keratin K1.
Sybert V.P.; Francis J.S.; Corden L.D.; Smith L.T.; Weaver M.; Stephens K.; McLean W.H.I.;
Am. J. Hum. Genet. 64:732-738(1999)
Cited for: VARIANTS AEI2 PHE-479 AND THR-479; Identification of a novel mutation in keratin 1 in a family with epidermolytic hyperkeratosis.
Arin M.J.; Longley M.A.; Epstein E.H. Jr.; Rothnagel J.A.; Roop D.R.;
Exp. Dermatol. 9:16-19(2000)
Cited for: VARIANT EHK1 THR-479; Expanding the keratin mutation database: novel and recurrent mutations and genotype-phenotype correlations in 28 patients with epidermolytic ichthyosis.
Arin M.J.; Oji V.; Emmert S.; Hausser I.; Traupe H.; Krieg T.; Grimberg G.;
Br. J. Dermatol. 164:442-447(2011)
Cited for: VARIANTS EHK1 LYS-188; SER-188; GLN-478; THR-479; PRO-485; PRO-486 AND LYS-490;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.