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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P51608: Variant p.Glu10Gln

Methyl-CpG-binding protein 2
Gene: MECP2
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Variant information Variant position: help 10 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Glutamate (E) to Glutamine (Q) at position 10 (E10Q, p.Glu10Gln). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from medium size and acidic (E) to medium size and polar (Q) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 2 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In RTT. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 10 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 486 The length of the canonical sequence.
Location on the sequence: help MVAGMLGLR E EKSEDQDLQGLKDKPLKFKK The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         MVAGMLGLREEKSEDQDLQGLKDKPLKFKK

Mouse                         MVAGMLGLREEKSEDQDLQGLRDKPLKFKK

Rat                           MVAGMLGLRKEKSEDQDLQGLKEKPLKFKK
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 486 Methyl-CpG-binding protein 2
Region 1 – 119 Disordered
Compositional bias 8 – 49 Basic and acidic residues
Modified residue 13 – 13 Phosphoserine



Literature citations
Diagnostic testing for Rett syndrome by DHPLC and direct sequencing analysis of the MECP2 gene: identification of several novel mutations and polymorphisms.
Buyse I.M.; Fang P.; Hoon K.T.; Amir R.E.; Zoghbi H.Y.; Roa B.B.;
Am. J. Hum. Genet. 67:1428-1436(2000)
Cited for: VARIANTS RTT VAL-100; GLN-106; TRP-106; CYS-133; ARG-152; SER-155; MET-158; ARG-305; CYS-306 AND HIS-306; VARIANTS CYS-86; MET-203; PRO-287; ALA-291; LYS-397; ILE-412 AND THR-444; MECP2 mutations account for most cases of typical forms of Rett syndrome.
Bienvenu T.; Carrie A.; de Roux N.; Vinet M.-C.; Jonveaux P.; Couvert P.; Villard L.; Arzimanoglou A.; Beldjord C.; Fontes M.; Tardieu M.; Chelly J.;
Hum. Mol. Genet. 9:1377-1384(2000)
Cited for: VARIANTS RTT GLN-106; MET-158; ARG-302; CYS-306 AND ALA-322; Rett syndrome in adolescent and adult females: clinical and molecular genetic findings.
Smeets E.; Schollen E.; Moog U.; Matthijs G.; Herbergs J.; Smeets H.; Curfs L.; Schrander-Stumpel C.; Fryns J.-P.;
Am. J. Med. Genet. A 122:227-233(2003)
Cited for: VARIANTS RTT GLN-10; PRO-128; CYS-133; ARG-152; MET-158 AND CYS-306;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.