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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P19438: Variant p.Ser115Gly

Tumor necrosis factor receptor superfamily member 1A
Gene: TNFRSF1A
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Variant information Variant position: help 115 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Serine (S) to Glycine (G) at position 115 (S115G, p.Ser115Gly). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from small size and polar (S) to glycine (G) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 0 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In FPF. Any additional useful information about the variant.


Sequence information Variant position: help 115 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 455 The length of the canonical sequence.
Location on the sequence: help HLRHCLSCSKCRKEMGQVEI S SCTVDRDTVCGCRKNQYRHY The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         HLRHCLSCSKCRKEMGQVEISSCTVDRDTVCGCRKNQYRHY

Mouse                         YLRQCLSCKTCRKEMSQVEISPCQADKDTVCGCKENQFQRY

Rat                           HVRQCLSCKTCRKEMFQVEISPCKADMDTVCGCKKNQFQRY

Pig                           HLTQCLSCSKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKY

Bovine                        HLRRCLSCSRCRDEMFQVEISPCVVDRDTVCGCRKNQYREY
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 30 – 455 Tumor necrosis factor receptor superfamily member 1A, membrane form
Chain 41 – 201 Tumor necrosis factor-binding protein 1
Topological domain 30 – 211 Extracellular
Repeat 83 – 125 TNFR-Cys 2
Disulfide bond 102 – 117
Disulfide bond 105 – 125
Alternative sequence 1 – 232 Missing. In isoform 3.
Beta strand 112 – 115



Literature citations
The tumor-necrosis-factor receptor-associated periodic syndrome: new mutations in TNFRSF1A, ancestral origins, genotype-phenotype studies, and evidence for further genetic heterogeneity of periodic fevers.
Aksentijevich I.; Galon J.; Soares M.; Mansfield E.; Hull K.; Oh H.-H.; Goldbach-Mansky R.; Dean J.; Athreya B.; Reginato A.J.; Henrickson M.; Pons-Estel B.; O'Shea J.J.; Kastner D.L.;
Am. J. Hum. Genet. 69:301-314(2001)
Cited for: VARIANTS FPF GLN-51; SER-59; GLY-62; LEU-75; GLY-115 AND GLN-121;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.