UniProtKB/Swiss-Prot P16109: Variant p.Thr274Ile

P-selectin
Gene: SELP
Feedback?

Variant information Variant position:

274 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Threonine (T) to Isoleucine (I) at position 274 (T274I, p.Thr274Ile). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from medium size and polar (T) to medium size and hydrophobic (I) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

-1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources:

Links to websites of interest for the variant.

Variant rs3917724 [ dbSNP | Ensembl ]

Sequence information Variant position:

274 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

830 The length of the canonical sequence.
Location on the sequence:

PPQCLAAQCPPLKIPERGNM T CLHSAKAFQHQSSCSFSCEE The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         PPQCLAAQCPPLKIPERGNMTCLHSAKAFQHQSSCSFSCEE

Mouse                         PPKCDAVQCQSLEAPPHGTMACMHPIAAFAYDSSCKFECQP

Rat                           PPQCKAVQCQSLEAPLHGTMDCTHPLAAFAYDSSCKFECQP

Bovine                        PPQCVAVQCPALKSPEQGSMSCVQSAEAFQHQSSCSFSCEE

Sheep                         PPQCVAVQCPALKSPEQGSMSCFHSAKAFQHQSSCSFSCEE

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	42 – 830	P-selectin
Topological domain	42 – 771	Extracellular
Domain	260 – 321	Sushi 2
Disulfide bond	262 – 306

Literature citations
Cloning of GMP-140, a granule membrane protein of platelets and endothelium: sequence similarity to proteins involved in cell adhesion and inflammation.
Johnston G.I.; Cook R.G.; McEver R.P.;
Cell 56:1033-1044(1989)
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA]; VARIANTS ILE-274; ASN-603 AND LEU-640; Submission
SeattleSNPs variation discovery resource;
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANTS ARG-179; MET-209; PHE-230; ILE-274; ASN-331; LEU-385; LYS-542; ASN-603; ALA-619; VAL-631; ASN-661; SER-673 AND PRO-756;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.