UniProtKB/Swiss-Prot P10636 : Variant p.Asn613His
Microtubule-associated protein tau
Gene: MAPT
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Variant information
Variant position:
613
The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:
LP/P [Disclaimer : Variants classification is intended for research purposes only, not for clinical and diagnostic use . The label disease variant is assigned according to literature reports on probable disease-association that can be based on theoretical reasons. This label must not be considered as a definitive proof for the pathogenic role of a variant. ]
The variants are classified into three categories: LP/P, LB/B and US.LP/P: likely pathogenic or pathogenic. LB/B: likely benign or benign. US: uncertain significance
Residue change:
From Asparagine (N) to Histidine (H) at position 613 (N613H, p.Asn613His).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:
Similar physico-chemical property. Both residues are medium size and polar.
The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:
1
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another: Lowest score: -4 (low probability of substitution).Highest score: 11 (high probability of substitution). More information can be found on the following page
Variant description:
In FTD; reduced the ability of tau to promote microtubule assembly without having a significant effect on tau filament formation; effects at both the RNA and the protein level.
Any additional useful information about the variant.
Other resources:
Links to websites of interest for the variant.
Sequence information
Variant position:
613
The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:
758
The length of the canonical sequence.
Location on the sequence:
QIINKKLDLSNVQSKCGSKD
N IKHVPGGGSVQIVYKPVDLS
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:
The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human QIINKKLDLSNVQSKCGSKDN IKHVPGGGSVQIVYKPVDLS
Gorilla QIINKKLDLSNVQSKCGSKDN IKHVPGGGSVQIVYKPVDLS
Rhesus macaque QIINKKLDLSNVQSKCGSKDN IKHVPGGGSVQIVYKPVDLS
Chimpanzee QIINKKLDLSNVQSKCGSKDN IKHVPGGGSVQIVYKPVDLS
Mouse QIINKKLDLSNVQSKCGSKDN IKHVPGGGSVQIVYKPVDLS
Rat QIINKKLDLSNVQSKCGSKDN IKHVPGGGSVHIVYKPVDLS
Bovine QIINKKLDLSNVQSKCGSKDN IKHVPGGGSVQIVYKPVDLS
Goat QIINKKLDLSNVQSKCGSKDN IKHVPGGGSVQIVYKPVDLS
Sequence annotation in neighborhood:
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:Type: the type of sequence feature. Positions: endpoints of the sequence feature. Description: contains additional information about the feature.
Type Positions Description
Chain
2 – 758
Microtubule-associated protein tau
Repeat
592 – 622
Tau/MAP 2
Region
561 – 685
Microtubule-binding domain
Site
607 – 607
Not glycated
Site
611 – 611
Not glycated
Site
615 – 615
Not glycated
Site
628 – 628
Not glycated
Modified residue
596 – 596
Deamidated asparagine; in tau and PHF-tau; partial
Modified residue
598 – 598
N6-acetyllysine; alternate
Modified residue
602 – 602
Phosphoserine; by PHK
Modified residue
607 – 607
N6-acetyllysine
Modified residue
610 – 610
Phosphoserine
Modified residue
615 – 615
N6-acetyllysine; alternate
Modified residue
622 – 622
Phosphoserine; by PHK
Modified residue
628 – 628
N6,N6-dimethyllysine; alternate
Modified residue
628 – 628
N6-acetyllysine; alternate
Glycosylation
597 – 597
N-linked (Glc) (glycation) lysine; in PHF-tau; in vitro
Glycosylation
598 – 598
N-linked (Glc) (glycation) lysine; in PHF-tau; in vitro
Disulfide bond
608 – 639
Cross
598 – 598
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate
Cross
615 – 615
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate
Cross
628 – 628
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); in PHF-tau
Alternative sequence
592 – 622
Missing. In isoform Tau-A, isoform Tau-B, isoform Tau-C and isoform Fetal-tau.
Beta strand
613 – 615
Literature citations
Familial frontotemporal dementia and parkinsonism with a novel N296H mutation in exon 10 of the tau gene and a widespread tau accumulation in the glial cells.
Iseki E.; Matsumura T.; Marui W.; Hino H.; Odawara T.; Sugiyama N.; Suzuki K.; Sawada H.; Arai T.; Kosaka K.;
Acta Neuropathol. 102:285-292(2001)
Cited for: VARIANT FTD HIS-613;
Functional effects of tau gene mutations deltaN296 and N296H.
Yoshida H.; Crowther R.A.; Goedert M.;
J. Neurochem. 80:548-551(2002)
Cited for: CHARACTERIZATION OF VARIANTS FTD ASN-613 DEL AND HIS-613;
Disclaimer:
Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.