UniProtKB/Swiss-Prot Q8WY64: Variant p.Asn342Ser

• Variant information
• Sequence information
• Literature citations
• All

Variant information

Variant position: 342 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: LB/B The variants are classified into three categories: LP/P, LB/B and US.

• LP/P: likely pathogenic or pathogenic.
• LB/B: likely benign or benign.
• US: uncertain significance

Residue change: From Asparagine (N) to Serine (S) at position 342 (N342S, p.Asn342Ser). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: Change from medium size and polar (N) to small size and polar (S) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: 1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

• Lowest score: -4 (low probability of substitution).
• Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources: Links to websites of interest for the variant.

• Variant rs9370867 [ dbSNP | Ensembl ]

Sequence information

Variant position: 342 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: 445 The length of the canonical sequence.
Location on the sequence: VYDHARRALYNAGVVDLVSR N NQSPSHSPLKSSESSMNCSS The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Sequence annotation in neighborhood: The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

• Type: the type of sequence feature.
• Positions: endpoints of the sequence feature.
• Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 445	E3 ubiquitin-protein ligase MYLIP
Binding site	360 – 360
Alternative sequence	316 – 445	Missing. In isoform 2.

Literature citations

MIR is a novel ERM-like protein that interacts with myosin regulatory light chain and inhibits neurite outgrowth.
Olsson P.-A.; Korhonen L.; Mercer E.A.; Lindholm D.;
J. Biol. Chem. 274:36288-36292(1999)
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1); TISSUE SPECIFICITY; DEVELOPMENTAL STAGE; FUNCTION; INTERACTION WITH MYOSIN REGULATORY LIGHT CHAIN (MRLC); VARIANT SER-342; Submission
Shi W.; Mullersman J.E.;
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1); VARIANT SER-342; Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells.
Zhang Q.-H.; Ye M.; Wu X.-Y.; Ren S.-X.; Zhao M.; Zhao C.-J.; Fu G.; Shen Y.; Fan H.-Y.; Lu G.; Zhong M.; Xu X.-R.; Han Z.-G.; Zhang J.-W.; Tao J.; Huang Q.-H.; Zhou J.; Hu G.-X.; Gu J.; Chen S.-J.; Chen Z.;
Genome Res. 10:1546-1560(2000)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2); VARIANT SER-342; Large-scale cDNA transfection screening for genes related to cancer development and progression.
Wan D.; Gong Y.; Qin W.; Zhang P.; Li J.; Wei L.; Zhou X.; Li H.; Qiu X.; Zhong F.; He L.; Yu J.; Yao G.; Jiang H.; Qian L.; Yu Y.; Shu H.; Chen X.; Xu H.; Guo M.; Pan Z.; Chen Y.; Ge C.; Yang S.; Gu J.;
Proc. Natl. Acad. Sci. U.S.A. 101:15724-15729(2004)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1); VARIANT SER-342;