UniProtKB/Swiss-Prot P38398: Variant p.Met1411Thr

Breast cancer type 1 susceptibility protein
Gene: BRCA1
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Variant information Variant position:

1411 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

US The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Methionine (M) to Threonine (T) at position 1411 (M1411T, p.Met1411Thr). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from medium size and hydrophobic (M) to medium size and polar (T) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

-1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Variant description:

In BC and OC; uncertain significance; decreased interaction with PALB2. Any additional useful information about the variant.
Other resources:

Links to websites of interest for the variant.

Variant rs273900729 [ dbSNP | Ensembl ]

Sequence information Variant position:

1411 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

1863 The length of the canonical sequence.
Location on the sequence:

ILTTQQRDTMQHNLIKLQQE M AELEAVLEQHGSQPSNSYPS The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         ILTTQQRDTMQHNLIKLQQEMAELEAVLEQHGSQPSNSYPS

Gorilla                       ILTTQQRDTMQDNLIKLQQEMAELEAVLEQHGSQPSNSYPS

                              ILTTQQRDTMQDNLIKLQQEMAELEAVLEQHESQPSNSSPS

Rhesus macaque                ILTTQQRDTMQDNLIKLQQEMAELEAVLEQHGSQPSNSYPS

Chimpanzee                    ILTTQQRDTMQDNLIKLQQEMAELEAVLEQHGSQPSNSYPS

Mouse                         ILTTQQRATMKYNLIKLQQEMAHLEAVLEQRGNQPSGHSPS

Rat                           ILTTQQRATMKDNLIKLQQEMAQLEAVLEQHGSQPSGHPPC

Bovine                        ILTTQQRDTMQDNLLKLQQEMAELEAVLERHGSQPSHSSAS

Caenorhabditis elegans        -----------------------------------------

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 1863	Breast cancer type 1 susceptibility protein
Region	1397 – 1424	Interaction with PALB2
Modified residue	1394 – 1394	Phosphothreonine; by ATR; in vitro
Modified residue	1423 – 1423	Phosphoserine; by ATM and ATR
Alternative sequence	64 – 1863	Missing. In isoform 2.
Mutagenesis	1394 – 1394	T -> A. Reduces in vitro phosphorylation by ATR.
Mutagenesis	1423 – 1423	S -> A. Inhibition of the infrared-induced G2 arrest. Reduces phosphorylation by ATR.

Literature citations
One in 10 ovarian cancer patients carry germ line BRCA1 or BRCA2 mutations: results of a prospective study in Southern Sweden.
Malander S.; Ridderheim M.; Masbaeck A.; Loman N.; Kristoffersson U.; Olsson H.; Nilbert M.; Borg A.;
Eur. J. Cancer 40:422-428(2004)
Cited for: VARIANTS OC GLY-61; THR-1411; ARG-1697 AND TRP-1699; A high-throughput functional complementation assay for classification of BRCA1 missense variants.
Bouwman P.; van der Gulden H.; van der Heijden I.; Drost R.; Klijn C.N.; Prasetyanti P.; Pieterse M.; Wientjens E.; Seibler J.; Hogervorst F.B.; Jonkers J.;
Cancer Discov. 3:1142-1155(2013)
Cited for: CHARACTERIZATION OF VARIANTS BC PHE-4; THR-18; GLN-45; GLY-61; GLY-64; TYR-67; LYS-132; HIS-142; PHE-147; PRO-165; TRP-170; TYR-186; ILE-191; MET-231; VAL-245; VAL-246; LEU-271; PHE-668; ASN-695; LEU-798; TYR-810; LYS-826; GLN-841; HIS-856; ASN-1101; ASN-1140; GLY-1140; LYS-1214; LYS-1236; SER-1267; VAL-1282; SER-1297 DEL; ARG-1301; LYS-1346; ILE-1378; VAL-1400; PRO-1407; THR-1411; GLY-1443; GLY-1448; CYS-1486; MET-1534; PRO-1589; THR-1628; PRO-1651; PHE-1651; PHE-1655; ARG-1686; GLN-1686; VAL-1688 DEL; ILE-1691; TRP-1699; GLN-1699; GLU-1706; ALA-1706; GLU-1708; CYS-1718; ALA-1720; LYS-1735; ALA-1736; GLY-1739; VAL-1739; GLN-1746; THR-1753; PRO-1764; SER-1767; VAL-1770; CYS-1782; THR-1789; ASP-1794; ASP-1804; ARG-1812; ARG-1837 AND LEU-1862; VARIANTS CYS-105; CYS-866; ALA-1060; LYS-1250 AND ILE-1652;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.