UniProtKB/Swiss-Prot P00846: Variant p.Met60Thr

ATP synthase subunit a
Gene: MT-ATP6
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Variant information Variant position:

60 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Methionine (M) to Threonine (T) at position 60 (M60T, p.Met60Thr). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from medium size and hydrophobic (M) to medium size and polar (T) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

-1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources:

Links to websites of interest for the variant.

Variant rs878959404 [ dbSNP | Ensembl ]

Sequence information Variant position:

60 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

226 The length of the canonical sequence.
Location on the sequence:

NRLITTQQWLIKLTSKQMMT M HNTKGRTWSLMLVSLIIFIA The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         NRLITTQQ----WLIKLTSKQMMTMHNTKGRTWSL---MLVSLIIFI--A

Gorilla                       NRLIATQQ----WLIQLTSKQMMTMHNAKGRTWSL---MLM

                              NRLISIQQ----WLIQLTSKQMLAIHNQKGRTWAL---MLM

Chimpanzee                    NRLITTQQ----WLIQLTSKQMMTMHSTKGRTWSL---MLV

Mouse                         NRLHSFQH----WLVKLIIKQMMLIHTPKGRTWTL---MIV

Rat                           NRLHSFQH----WLIKLIIKQMMLIHTPKGRTWAL---MIV

Pig                           NRTISIQQ----WLIQLTSKQMMAIHNQKGQTWSL---MLM

Bovine                        NRFVTLQQ----WMLQLVSKQMMSIHNSKGQTWTL---MLM

Rabbit                        NRLVSTQQ----WLAQLILKQMMLMHSPKGRTWSL---MLI

Goat                          NRLVSLQQ----WALQLMSKQMMSIHNTKGQTWTL---MLM

Sheep                         NRLISLQQ----WMLQLVSKQMMSIHNTKGQTWAL---MLM

Cat                           NRLVSLQQ----WLVQLTSKQMLAIHNHKGQTWAL---MLM

Horse                         NRLISIQQ----WLVQLTSKQMMAIHNSKGQTWTL---MLM

Chicken                       NRLSTIQL----WFTHLITKQLMTPLNKAGHKWAL---LLT

Xenopus laevis                NRLITLQS----WFLHNFTTIFYQLTSP-GHKWAL---LLT

Zebrafish                     NRLITVQT----WLTGRFTNQLMTPLNFSGHKWAL---LFA

Caenorhabditis elegans        ------------MLNTLVKKFLNSLVGVFSYTNTLPLSSVI

Drosophila                    SRYNIMWN----SILLTLHKEFKTLLGPSGHNGSTF--IFI

Slime mold                    NNWQHIGEMIYEFVVDLIIEQV-------GKPGILFFPFIM

Baker's yeast                 SRWLISQEAIYDTIMNMTKGQI------GGKNWGLYFPMIF

Fission yeast                 QKFGIAMEAIYFTMLNLVENQIHSSKTVSGQSYFP---FIW

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 226	ATP synthase subunit a

Literature citations
Lineage-specific selection in human mtDNA: lack of polymorphisms in a segment of MTND5 gene in haplogroup J.
Moilanen J.S.; Finnila S.; Majamaa K.;
Mol. Biol. Evol. 20:2132-2142(2003)
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANTS THR-11; THR-60; ALA-112 AND ALA-133; Natural selection shaped regional mtDNA variation in humans.
Mishmar D.; Ruiz-Pesini E.; Golik P.; Macaulay V.; Clark A.G.; Hosseini S.; Brandon M.; Easley K.; Chen E.; Brown M.D.; Sukernik R.I.; Olckers A.; Wallace D.C.;
Proc. Natl. Acad. Sci. U.S.A. 100:171-176(2003)
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANTS THR-60; TYR-90; ALA-112; LEU-117 AND THR-192; Phylogeny of mitochondrial DNA macrohaplogroup N in India, based on complete sequencing: implications for the peopling of South Asia.
Palanichamy M.G.; Sun C.; Agrawal S.; Bandelt H.-J.; Kong Q.-P.; Khan F.; Wang C.Y.; Chaudhuri T.K.; Palla V.; Zhang Y.-P.;
Am. J. Hum. Genet. 75:966-978(2004)
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANTS THR-7; THR-11; ILE-53; THR-60; ALA-112; VAL-121 AND ILE-213; Single nucleotide polymorphisms over the entire mtDNA genome that increase the power of forensic testing in Caucasians.
Coble M.D.; Just R.S.; O'Callaghan J.E.; Letmanyi I.H.; Peterson C.T.; Irwin J.A.; Parsons T.J.;
Int. J. Legal Med. 118:137-146(2004)
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANTS THR-11; THR-60; ALA-112 AND VAL-192;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.