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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P58012: Variant p.Tyr215Cys

Forkhead box protein L2
Gene: FOXL2
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Variant information Variant position: help 215 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Tyrosine (Y) to Cysteine (C) at position 215 (Y215C, p.Tyr215Cys). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from large size and aromatic (Y) to medium size and polar (C) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -2 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In BPES. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 215 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 376 The length of the canonical sequence.
Location on the sequence: help LQSGFLNNSWPLPQPPSPMP Y ASCQMAAAAAAAAAAAAAAG The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         LQSGFLNNSWPLPQPPSPMPYASCQMAAAAAAAAAAAAAAG

Mouse                         LQSGFLNNSWPLPQPPSPMPYASCQMAAAAAAAAAAAAAAG

Pig                           LQSGFLNNSWPLPQPPSPMPYASCQMAAAAAAAAAAAAAAG

Bovine                        LQSGFLNNSWPLPQPPSPMPYASCQMAAAAAAAAAAAAAAG

Rabbit                        LQSGFLNNSWPLPQPPSPMPYASCQMAAAAAAAAAAAAAAG

Goat                          LQSGFLNNSWPLPQPPSPMPYASCQMAAAAAAAAAAAAAAG
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 376 Forkhead box protein L2



Literature citations
Genetic analysis of a five generation Indian family with BPES: a novel missense mutation (p.Y215C).
Kumar A.; Babu M.; Raghunath A.; Venkatesh C.P.;
Mol. Vis. 10:445-449(2004)
Cited for: VARIANT BPES CYS-215; Differential functional effects of novel mutations of the transcription factor FOXL2 in BPES patients.
Nallathambi J.; Laissue P.; Batista F.; Benayoun B.A.; Lesaffre C.; Moumne L.; Pandaranayaka P.E.; Usha K.; Krishnaswamy S.; Sundaresan P.; Veitia R.A.;
Hum. Mutat. 29:E123-E131(2008)
Cited for: VARIANTS BPES ARG-98; PRO-108; CYS-215; CYS-217 AND ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-234 INS; VARIANT GLY-179; CHARACTERIZATION OF VARIANTS BPES PRO-108 AND CYS-217;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.