UniProtKB/Swiss-Prot P22303: Variant p.Arg34Gln

Acetylcholinesterase
Gene: ACHE
Feedback?

Variant information Variant position:

34 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Arginine (R) to Glutamine (Q) at position 34 (R34Q, p.Arg34Gln). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from large size and basic (R) to medium size and polar (Q) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Polymorphism:

ACHE is responsible for the Yt blood group system [MIM:112100]. The molecular basis of the Yt(a)=Yt1/Yt(b)=Yt2 blood group antigens is a single variation in position 353; His-353 corresponds to Yt(a) and the rare variant with Asn-353 to Yt(b). Additional information on the polymorphism described.
Other resources:

Links to websites of interest for the variant.

Variant rs17881553 [ dbSNP | Ensembl ]

Sequence information Variant position:

34 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

614 The length of the canonical sequence.
Location on the sequence:

ASPLLLLLLWLLGGGVGAEG R EDAELLVTVRGGRLRGIRLK The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         ASPLLLLLLWLLGGGVGAEGR----EDAELLVTVRGGRLRGIRLK

Mouse                         AFPLLFLLLSLLGGGARAEGR----EDPQLLVRVRGGQLRG

Rat                           ASPLLFLLLSLLGGGARAEGR----EDPQLLVRVRGGQLRG

Bovine                        TPP-LLLLLFLIGGGAEAEGP----EDPELLVMVRGGRLRG

Cat                           AAPILLLLLFLLGGGAEA-------EDPELLVTVRGGQLRG

Chicken                       MAPLFLLLLLLLSPSPTSAHRFAYSAPNRPEVRTTTGSVRG

Zebrafish                     LLPTVLLTFLFHNCFAQA--------EPDLVVATRLGRVQG

Drosophila                    PLPLVLVLSLHLSGVCGV--------IDRLVVQTSSGPVRG

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	32 – 614	Acetylcholinesterase

Literature citations
Submission
SeattleSNPs variation discovery resource;
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANTS GLN-34; ALA-135 AND ASN-353;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.