UniProtKB/Swiss-Prot O95551: Variant p.Gln249Glu

Tyrosyl-DNA phosphodiesterase 2
Gene: TDP2
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Variant information Variant position:

249 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Glutamine (Q) to Glutamate (E) at position 249 (Q249E, p.Gln249Glu). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from medium size and polar (Q) to medium size and acidic (E) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

2 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources:

Links to websites of interest for the variant.

Variant rs2294689 [ dbSNP | Ensembl ]

Sequence information Variant position:

249 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

362 The length of the canonical sequence.
Location on the sequence:

STRGHAAERMNQLKMVLKKM Q EAPESATVIFAGDTNLRDRE The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         STRGHAAERMNQLKMVLKKMQE---APESATVIFAGDTNLRDRE

Mouse                         STREHSAERIRQLKTVLGKMQE---APDSTTVIFAGDTNLR

Rat                           STRKHSAERINQLKTVFQKMQE---ATDSTTVIFAGDTNLR

Bovine                        STRGHAKERMNQFKMVLEKMQE---APGSATVIFAGDTNLR

Chicken                       STRDHSKERMKQLQIVLNKMQE---ESQSTTVIFGGDTNLR

Xenopus laevis                STKDHSKERLKQLDTVLKKMMD---APPSATVIFGGDTNLR

Xenopus tropicalis            STKDHSKERLKQLDIVLKKMMD---APPLATVIFGGDTNLR

Zebrafish                     SCKNQSQERTKQLRVVLQKIKE---APEDAIVIFAGDTNLR

Caenorhabditis elegans        STREHRPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLR

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 362	Tyrosyl-DNA phosphodiesterase 2
Active site	262 – 262	Proton donor/acceptor
Mutagenesis	262 – 262	D -> A. Loss of phosphodiesterase activity.
Mutagenesis	262 – 262	D -> HLM. Loss of phosphodiesterase activity.
Helix	234 – 249

Literature citations
Submission
SeattleSNPs variation discovery resource;
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANTS GLU-249 AND GLN-268;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.